View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0953_low_49 (Length: 385)
Name: NF0953_low_49
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_49 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 17)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 11157558 - 11157913
Alignment:
| Q |
1 |
ttctgaaataaaaatggattccagaccagtacaaccatcaatgtaaagctcttggagcttaggaaaaccatccaatgggaaggaggaaagtgagccacag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11157558 |
ttctgaaataaaaatggattccagaccagtacaaccatcaatgtaaagctcttggagcttaggaaaaccatccaatgggaaggaggaaagtgagccacag |
11157657 |
T |
|
| Q |
101 |
ctgctgactaaagtcaactccaaaagcgacgtgtaattgctccacgtttccggaggtaggaatgataacttcttgcaatcataaatactaagtgccttca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||| ||||||| |||| ||| || |
|
|
| T |
11157658 |
ctgctgactaaagtcaactccaaaagcgacgtgtaattgctccacgtttccggaggcatgaatgataacttctcgcaattataaataagaagttcctgca |
11157757 |
T |
|
| Q |
201 |
aagaagtgggtagaccttcccttggaaatgcagttaaagacggaatgctactgagtgtcaagaatcgaagacatgtgctgctcaaaatcatttggggaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11157758 |
aagaagtgggtagaccttcccttggaaatgcagttaaagacggaatgctatcgagtttcaagaatcgaagacatgtgctgctcaaaatcatttggggaag |
11157857 |
T |
|
| Q |
301 |
ggagaatattgtatcaaagaaacgtaccgatacccgttgcagtagacatggcaaat |
356 |
Q |
| |
|
|||||| |||||||||||||||| ||| |||||| |||||| ||||| ||||||| |
|
|
| T |
11157858 |
ggagaacattgtatcaaagaaacatactgataccgattgcagaagacaaggcaaat |
11157913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 11146392 - 11146747
Alignment:
| Q |
1 |
ttctgaaataaaaatggattccagaccagtacaaccatcaatgtaaagctcttggagcttaggaaaaccatccaatgggaaggaggaaagtgagccacag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11146392 |
ttctgaaataaaaatggattccagaccagtacaaccatcaatgacaagcttttggagcttaggaaaaccatccaatgggaaggaggaaagtgagccacag |
11146491 |
T |
|
| Q |
101 |
ctgctgactaaagtcaactccaaaagcgacgtgtaattgctccacgtttccggaggtaggaatgataacttcttgcaatcataaatactaagtgccttca |
200 |
Q |
| |
|
||||||| |||| |||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||| |||| ||||||| |||| ||| || |
|
|
| T |
11146492 |
ctgctgagtaaactcaactccaaaagcgatgtgtaattgctccacgtttccggaggcatgaatgataacttctcgcaactataaataagaagttcctgca |
11146591 |
T |
|
| Q |
201 |
aagaagtgggtagaccttcccttggaaatgcagttaaagacggaatgctactgagtgtcaagaatcgaagacatgtgctgctcaaaatcatttggggaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11146592 |
aagaagtgggtagaccttcccttggaaatgcagttaaagacggaattctactgagtctcaagaatcgaagacatgtgctgctcaaaatcatttggggaag |
11146691 |
T |
|
| Q |
301 |
ggagaatattgtatcaaagaaacgtaccgatacccgttgcagtagacatggcaaat |
356 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||||| ||||||| |
|
|
| T |
11146692 |
ggagaatattgtatcaaagaaatataccgataccgattgcagtagacaaggcaaat |
11146747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 10891837 - 10891482
Alignment:
| Q |
1 |
ttctgaaataaaaatggattccagaccagtacaaccatcaatgtaaagctcttggagcttaggaaaaccatccaatgggaaggaggaaagtgagccacag |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10891837 |
ttctgaaataaaaatggattccagaccgctacaaccttcaatgtgaagcagttggagcttaggaaaaccatttaatgggaaggaggaaagtgagccacag |
10891738 |
T |
|
| Q |
101 |
ctgctgactaaagtcaactccaaaagcgacgtgtaattgctccacgtttccggaggtaggaatgataacttcttgcaatcataaatactaagtgccttca |
200 |
Q |
| |
|
|| | ||| ||||||||||||| || ||||| |||||||||||||| | ||| | ||||||||| |||||||||| | |||||| ||||||||||| |
|
|
| T |
10891737 |
ctaccatttaatttcaactccaaaagagatgtgtagttgctccacgtttctgaaggcatgaatgataaattcttgcaattacaaatacaaagtgccttca |
10891638 |
T |
|
| Q |
201 |
aagaagtgggtagaccttcccttggaaatgcagttaaagacggaatgctactgagtgtcaagaatcgaagacatgtgctgctcaaaatcatttggggaag |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10891637 |
aagatgtgggtagaccttcccttggaaatgcagttaaagacggaatgctatcgagtctcaagaattgaagacatgtgctgctcaaaatcatttggggaag |
10891538 |
T |
|
| Q |
301 |
ggagaatattgtatcaaagaaacgtaccgatacccgttgcagtagacatggcaaat |
356 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10891537 |
ggagaatattgtatcaaacaaacgtaccgatacccgttgcagtagacaaggcaaat |
10891482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 8863817 - 8863466
Alignment:
| Q |
1 |
ttctgaaataaaaatggattccagaccagtacaaccatcaatgtaaagctcttggagcttaggaaaaccatccaatgggaaggaggaaagtgagccacag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8863817 |
ttctgaaataaaaatggattccagaccagtacaaccatcaatgacaagctcttggagcttaggaaaaccattcaatgggaaggaggaaagtgagccacag |
8863718 |
T |
|
| Q |
101 |
ctgctgactaaagtcaactccaaaagcgacgtgtaattgctccacgtttccggaggtaggaatgataacttcttgcaatcataaatactaagtgccttca |
200 |
Q |
| |
|
|| || |||||||||| | ||||||||| |||||||||||||||||||| ||||| | |||||||| ||||| |||| ||||||| || ||||| || |
|
|
| T |
8863717 |
cttctttctaaagtcaaatgcaaaagcgatgtgtaattgctccacgtttctggaggcatgaatgatagcttctcacaattataaatatgaattgcctgca |
8863618 |
T |
|
| Q |
201 |
aagaagtgggtagaccttcccttggaaatgcagttaaagacggaatgctactgagtgtcaagaatcgaagacatgtgctgctcaaaatcatttggggaag |
300 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||| |||||| ||||||||||||||||||| |||||| |
|
|
| T |
8863617 |
aagaagtgggtacaccttcccttggaaatgcagttaaagacggaacactgtggagtgtcaagaatttaagacaagtgctgctcaaaatcattttgggaag |
8863518 |
T |
|
| Q |
301 |
ggagaatattgtatcaaagaaacgtaccgatacccgttgcagtagacatggc |
352 |
Q |
| |
|
||||||||||||||||| ||||||| | ||||| |||||||||||||||| |
|
|
| T |
8863517 |
agagaatattgtatcaaaaaaacgtagtgttacccattgcagtagacatggc |
8863466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 11128567 - 11128917
Alignment:
| Q |
1 |
ttctgaaataaaaatggattccagaccagtacaaccatcaatgtaaagctcttggagcttaggaaaaccatccaatgggaaggaggaaagtgagccacag |
100 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||| || |||| ||||||||||||||||||||||||||| |||||| || ||||||||||| |||| |
|
|
| T |
11128567 |
ttctgaaataaagatggattccagacaagtacaacgattaatgaaaagctcttggagcttaggaaaaccattcaatggaaaagaggaaagtgaattacag |
11128666 |
T |
|
| Q |
101 |
ctgctgactaaagtcaactccaaaagcgacgtgtaattgctccacgtttccggaggtaggaatgataacttcttgcaatcataaatactaagtgccttca |
200 |
Q |
| |
|
|| | ||||||||||||||||||||| |||||||||||||| ||||||||||| | |||||||||||||| ||||| |||||||| |||| ||| || |
|
|
| T |
11128667 |
ctatttgttaaagtcaactccaaaagcgatgtgtaattgctccatgtttccggaggcatgaatgataacttctcgcaattataaatacaaagttcctgca |
11128766 |
T |
|
| Q |
201 |
aagaagtgggtagaccttcccttggaaatgcagttaaagacggaatgctactgagtgtcaagaatcgaagacatgtgctgctcaaaatcatttggggaag |
300 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||| || |||| |||||||| |||||| ||||||||||||||||||| |||||| |
|
|
| T |
11128767 |
aagaagtgggtagaccatcccttggaaatacagttaaagacggaacactgtggagtttcaagaatttaagacaagtgctgctcaaaatcattttgggaag |
11128866 |
T |
|
| Q |
301 |
ggagaatattgtatcaaagaaacgtaccgatacccgttgcagtagacatgg |
351 |
Q |
| |
|
||||||||||||||||||||||| | | ||| | ||||||||||||||| |
|
|
| T |
11128867 |
agagaatattgtatcaaagaaacgcagggctacacattgcagtagacatgg |
11128917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 10531066 - 10530974
Alignment:
| Q |
124 |
aagcgacgtgtaattgctccacgtttccggaggtaggaatgataacttcttgcaatcataaatactaagtgccttcaaagaagtgggtagacc |
216 |
Q |
| |
|
|||||| ||||| ||||||||||||| ||||| | ||||| |||||||| |||| || ||||| ||||| || ||| |||||||||||||| |
|
|
| T |
10531066 |
aagcgatgtgtatctgctccacgtttcaggaggcatgaatgctaacttctcacaattatcaatacaaagtgactgcaatgaagtgggtagacc |
10530974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 13173556 - 13173465
Alignment:
| Q |
1 |
ttctgaaataaaaatggattccagaccagtacaaccatcaatgtaaagctcttggagcttaggaaaaccatccaatgggaaggaggaaagtg |
92 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||| ||||||| || ||||||||||| ||||| |||| ||||| |
|
|
| T |
13173556 |
ttctgaaataaaaatggattccagatttttacagccatcaatgtaaagaccttggagggctgggaaaccatccaaagggaatgaggtaagtg |
13173465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 173
Target Start/End: Complemental strand, 9841256 - 9841214
Alignment:
| Q |
131 |
gtgtaattgctccacgtttccggaggtaggaatgataacttct |
173 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| |||| |
|
|
| T |
9841256 |
gtgtaattgctccacgtttcaggaggtaggaaggataaattct |
9841214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 173
Target Start/End: Complemental strand, 10034401 - 10034359
Alignment:
| Q |
131 |
gtgtaattgctccacgtttccggaggtaggaatgataacttct |
173 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| |||| |
|
|
| T |
10034401 |
gtgtaattgctccacgtttcaggaggtaggaaggataaattct |
10034359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 173
Target Start/End: Complemental strand, 10129323 - 10129281
Alignment:
| Q |
131 |
gtgtaattgctccacgtttccggaggtaggaatgataacttct |
173 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| |||| |
|
|
| T |
10129323 |
gtgtaattgctccacgtttcaggaggtaggaaggataaattct |
10129281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 10361472 - 10361514
Alignment:
| Q |
131 |
gtgtaattgctccacgtttccggaggtaggaatgataacttct |
173 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| |||| |
|
|
| T |
10361472 |
gtgtaattgctccacgtttcaggaggtaggaaggataaattct |
10361514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 10431712 - 10431754
Alignment:
| Q |
131 |
gtgtaattgctccacgtttccggaggtaggaatgataacttct |
173 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| |||| |
|
|
| T |
10431712 |
gtgtaattgctccacgtttcaggaggtaggaaggataaattct |
10431754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 173
Target Start/End: Complemental strand, 10665864 - 10665822
Alignment:
| Q |
131 |
gtgtaattgctccacgtttccggaggtaggaatgataacttct |
173 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| |||| |
|
|
| T |
10665864 |
gtgtaattgctccacgtttcaggaggtaggaaggataaattct |
10665822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 168
Target Start/End: Complemental strand, 10091192 - 10091155
Alignment:
| Q |
131 |
gtgtaattgctccacgtttccggaggtaggaatgataa |
168 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
10091192 |
gtgtaattgctccacgtttcaggaggtaggaaggataa |
10091155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 168
Target Start/End: Complemental strand, 10198074 - 10198037
Alignment:
| Q |
131 |
gtgtaattgctccacgtttccggaggtaggaatgataa |
168 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
10198074 |
gtgtaattgctccacgtttcaggaggtaggaaggataa |
10198037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 164
Target Start/End: Original strand, 11244194 - 11244227
Alignment:
| Q |
131 |
gtgtaattgctccacgtttccggaggtaggaatg |
164 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
11244194 |
gtgtaattgctccacgtttcaggaggtaggaatg |
11244227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 13853125 - 13853174
Alignment:
| Q |
124 |
aagcgacgtgtaattgctccacgtttccggaggtaggaatgataacttct |
173 |
Q |
| |
|
|||||| |||||||||||||| ||||| ||||| ||||||||||| |||| |
|
|
| T |
13853125 |
aagcgatgtgtaattgctccatgtttcaggaggaaggaatgataaattct |
13853174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 246
Target Start/End: Complemental strand, 11487426 - 11487312
Alignment:
| Q |
132 |
tgtaattgctccacgtttccggaggtaggaatgataacttcttgcaatcataaatactaagtgccttcaaagaagtgggtagaccttcccttggaaatgc |
231 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||| |||| ||| || || || ||||| | ||| ||||| |||||||| ||| | |||||||| |
|
|
| T |
11487426 |
tgtaattgctccacgtttcaggaggaaggaatgataaattctcacaactatgaacacaaagtgattgcaatgaagtaggtagaccctccgtaggaaatgc |
11487327 |
T |
|
| Q |
232 |
agttaaagacggaat |
246 |
Q |
| |
|
||| | ||||||||| |
|
|
| T |
11487326 |
agtgagagacggaat |
11487312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 133432 - 133523
Alignment:
| Q |
1 |
ttctgaaataaaaatggattccagaccagtacaaccatcaatgtaaagctcttggagcttaggaaaaccatccaatgggaaggaggaaagtg |
92 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||| ||||||| || ||||||||||| ||||| |||| ||||| |
|
|
| T |
133432 |
ttctgaaataaaaatggattccagatttttacagccatcaatgtaaagaccttggagggctgggaaaccatccaaagggaatgaggtaagtg |
133523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 55273 - 55315
Alignment:
| Q |
131 |
gtgtaattgctccacgtttccggaggtaggaatgataacttct |
173 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| |||| |
|
|
| T |
55273 |
gtgtaattgctccacgtttcaggaggtaggaaggataaattct |
55315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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