View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_low_5 (Length: 547)
Name: NF0953_low_5
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 289 - 536
Target Start/End: Complemental strand, 26397965 - 26397718
Alignment:
| Q |
289 |
cccccaaaaagatgtgagcattatggaatttccacaataatcacaggtcaactataatccaaccatatgatttttgtttgactcgataaatataagatgc |
388 |
Q |
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| T |
26397965 |
cccccaaaaagatgtgagcattatggaatttccacaataatcacaggtcaactataatccaaccatatgatttttgtttgactcgataaatataagatgc |
26397866 |
T |
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| Q |
389 |
acaaatatatattccaaacatataaaagctaactttgagttttgttatctaaatttgtaataaaaccgtccttaagcgccactatgtagcaacaagcgat |
488 |
Q |
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| T |
26397865 |
acaaatatatattccaaacatataaaagctaactttgagttttgttatctaaatttgtaataaaaccgtccttaagcgccactatgtagcaacaagcgat |
26397766 |
T |
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| Q |
489 |
aatttaacagcaaattaaaataaaagtttataacattcaattattcat |
536 |
Q |
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| T |
26397765 |
aatttaacaggaaattaaaataaaagtttataacattcaattattcat |
26397718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 30 - 288
Target Start/End: Complemental strand, 26398313 - 26398055
Alignment:
| Q |
30 |
cttgccggttgatggttggtctgatttttaaaacactagataggatatttctaataaaacctatactcaagatataaaataccaagacaggttgagataa |
129 |
Q |
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| T |
26398313 |
cttgctggttgatggttggtctgatttttaaaacactggataggacatttctaataaaacctatactcaagatataaaatacaaagacaggatgagataa |
26398214 |
T |
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| Q |
130 |
gattaataatcgaattacaatatcaccaaccccaaccgaatatgagaaatattaggaacagaacactgcatattcaatcaacatgttgacaaatccacca |
229 |
Q |
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| T |
26398213 |
gattaataatagaattacagtatcaccaaccccaaccgaatatgagaaagattaggaacagaacactgcatattcaatcaacatgttgacaaatccacca |
26398114 |
T |
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| Q |
230 |
catatcattatcaatgcaatcgccaaatgggttcatgatcacaatcatataaggaacaa |
288 |
Q |
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| T |
26398113 |
catatcattatcaatgcaatcgccaaatgggttcatgatcacaatcatataaggaacaa |
26398055 |
T |
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