View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_low_50 (Length: 384)
Name: NF0953_low_50
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 66 - 306
Target Start/End: Complemental strand, 24134368 - 24134122
Alignment:
| Q |
66 |
ttattttattttattcagtacctttaaaaacaatttcaatttttaatatttcactttcatatgtata------atattgttgaatcatgtctagggagaa |
159 |
Q |
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| T |
24134368 |
ttattttattttattcagtacccttaaaaacaatttcaatttttaatatttcactttcatatgtatatgtataatatggttgaatcatgtctagggagaa |
24134269 |
T |
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| Q |
160 |
acctacacatgcagtttctaacctggtcagtgagagtgttgctgctcctaagagaaatcaaaatatgatcatctcattgaaaaaggtagtaatctctaaa |
259 |
Q |
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| T |
24134268 |
acctacacatgcagtttctaacctggtcagtgagagtgttgctgctcctaagagaaatcaaaatatgaacatctcactgaaaaaggtagtaatctctaaa |
24134169 |
T |
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| Q |
260 |
tcaagcaatttattttattgattaattttaaactaacattggcaaca |
306 |
Q |
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| T |
24134168 |
tcaagcaatttattttattgattaattttaaactaacattggcaaca |
24134122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 107 - 306
Target Start/End: Complemental strand, 19756558 - 19756359
Alignment:
| Q |
107 |
tttaatatttcactttcatatgtataatattgttgaatcatgtctagggagaaacctacacatgcagtttctaacctggtcagtgagagtgttgctgctc |
206 |
Q |
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| T |
19756558 |
tttaatatttcactttcatatgtataatatggttgaatcatgtccagggagaaacctacacttgcagtttctaaccaagtaagtgagaatgttgctgctc |
19756459 |
T |
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| Q |
207 |
ctaagagaaatcaaaatatgatcatctcattgaaaaaggtagtaatctctaaatcaagcaatttattttattgattaattttaaactaacattggcaaca |
306 |
Q |
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| T |
19756458 |
caaagagaaatcaaaatatgaacatctcattcaaaaaggtttaaatatctaaataaagtcatttattttattatttaattttaaaccaacattgacaaca |
19756359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 24134831 - 24134786
Alignment:
| Q |
1 |
tctataacttggtataatttcaaaattatttatccatggtattttt |
46 |
Q |
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| T |
24134831 |
tctataacttggtataatttcaaaattatttacacatggtattttt |
24134786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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