View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_low_52 (Length: 382)
Name: NF0953_low_52
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 83604 - 83318
Alignment:
| Q |
1 |
tgtatttggtgcatggccaagctgattagaaacaatattttaactggacacccggttaagagtgtttgacacgtcatacaagttccaaacatgtttattc |
100 |
Q |
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| T |
83604 |
tgtatttgttgcatggccaagctgattagaaacaatattttaactggacacccggttaagagtgtttgacacgtcatacaagttccaaacatgtttattc |
83505 |
T |
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| Q |
101 |
aaaaaagagaagtgcccatgcttgataggttgattgtctctgtcctacacaagtcaatttttcttataattagttatatgttttaggcgtttaaatgtaa |
200 |
Q |
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| T |
83504 |
aaaaaagagaagtgcccatgcttgataggttgattgtctctgtcctacacaagtcaatttgtcttataattagttatatgttttaggcgtttaaatgtaa |
83405 |
T |
|
| Q |
201 |
ttctttggtttccttcaaaattgtaattttaaatttgaatttggcagcttctaatttaatatgttctaattttattgttgtttctcc |
287 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
83404 |
ttctttggtgtccttcaaaattgtaattttaaatttgaatttggcagcttctaatttaatatcttctaattttattgttgtttctcc |
83318 |
T |
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