View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0953_low_57 (Length: 346)

Name: NF0953_low_57
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0953_low_57
NF0953_low_57
[»] chr4 (13 HSPs)
chr4 (7-184)||(7291458-7291635)
chr4 (210-317)||(7291352-7291459)
chr4 (177-297)||(47304545-47304665)
chr4 (193-298)||(53994631-53994736)
chr4 (194-297)||(47681643-47681746)
chr4 (177-297)||(15521755-15521875)
chr4 (177-296)||(34458656-34458775)
chr4 (231-298)||(43137143-43137210)
chr4 (230-298)||(1458766-1458834)
chr4 (230-297)||(23602417-23602484)
chr4 (219-297)||(19901510-19901588)
chr4 (235-292)||(13610884-13610941)
chr4 (202-292)||(31763264-31763354)
[»] chr5 (7 HSPs)
chr5 (202-298)||(16719676-16719772)
chr5 (202-298)||(34583014-34583110)
chr5 (199-289)||(12621861-12621951)
chr5 (231-292)||(10542335-10542396)
chr5 (194-298)||(31224231-31224335)
chr5 (216-298)||(40897037-40897119)
chr5 (202-298)||(5927187-5927283)
[»] chr3 (4 HSPs)
chr3 (184-287)||(53199961-53200064)
chr3 (202-298)||(9798545-9798641)
chr3 (239-297)||(44028256-44028314)
chr3 (233-317)||(54739189-54739273)
[»] chr2 (8 HSPs)
chr2 (194-292)||(30491111-30491209)
chr2 (202-298)||(38855125-38855221)
chr2 (231-297)||(40355562-40355628)
chr2 (202-295)||(38119981-38120074)
chr2 (202-298)||(34640499-34640595)
chr2 (216-298)||(38064468-38064550)
chr2 (249-298)||(12069075-12069124)
chr2 (216-297)||(41533417-41533498)
[»] chr1 (7 HSPs)
chr1 (216-297)||(38669553-38669634)
chr1 (233-317)||(9857278-9857361)
chr1 (236-292)||(8772545-8772601)
chr1 (203-297)||(51127104-51127198)
chr1 (240-297)||(3289597-3289654)
chr1 (184-297)||(40707733-40707846)
chr1 (193-297)||(13258751-13258855)
[»] chr8 (6 HSPs)
chr8 (234-297)||(16576632-16576695)
chr8 (216-292)||(29909313-29909389)
chr8 (236-297)||(29443052-29443113)
chr8 (216-291)||(18311157-18311232)
chr8 (234-292)||(6636227-6636285)
chr8 (239-292)||(6628428-6628481)
[»] chr7 (8 HSPs)
chr7 (231-298)||(9459229-9459296)
chr7 (236-298)||(5738605-5738667)
chr7 (231-292)||(12218623-12218684)
chr7 (235-292)||(9626305-9626362)
chr7 (232-292)||(3525501-3525561)
chr7 (234-297)||(4919710-4919773)
chr7 (236-292)||(3406170-3406226)
chr7 (216-292)||(27157105-27157181)
[»] chr6 (5 HSPs)
chr6 (184-297)||(16166213-16166327)
chr6 (230-295)||(697884-697949)
chr6 (232-292)||(15055935-15055995)
chr6 (234-297)||(30591368-30591431)
chr6 (233-291)||(6138618-6138676)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 8e-89; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 7 - 184
Target Start/End: Complemental strand, 7291635 - 7291458
Alignment:
Q  7 tcgaaaaatatcaccatcaaaaaagatggggttgtgaaacaatttgtttcattaatcatttaacttaatttttggtcatttatatacagggatgtgacta 106  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7291635 tcgaaacatatcaccatcaaaaaagatggggttgtgaaacaatttgtttcattaatcatttaacttaatttttggtcatttatataccgggatgtgacta 7291536  T
Q  107 agaaagtattgctactatcatgtatgtagtatgtaattctataagtcgtgatttacttcatttatatcttaataagtc 184  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7291535 agaaagtattgctactatcatgtatgtagtatgtaattctacaagtcgtgatttacttcatttatatcttaataagtc 7291458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 210 - 317
Target Start/End: Complemental strand, 7291459 - 7291352
Alignment:
Q  210 tcggtatactaaaagtccgattcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaattaggcatggtttatga 309  Q
    |||| |||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||  ||||||    
T  7291459 tcggcatactaaaagaccggttcggcctaactcgtttagtaaatgagtcaagtttgagctttttaaaaagcctattaatttaattaggtctgacttatga 7291360  T
Q  310 ttataaaa 317  Q
    ||||||||    
T  7291359 ttataaaa 7291352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 177 - 297
Target Start/End: Original strand, 47304545 - 47304665
Alignment:
Q  177 aataagtcaggccacctgtcaaggacctatgactcggtatactaaaagtccgattcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaa 276  Q
    |||| ||||||||  |||||| || |||||| |||||  ||||||||| |||| ||||||||||||||||| |||||||||||||||||| |||||||||    
T  47304545 aataggtcaggccgtctgtcaggggcctatggctcgggctactaaaagcccgactcggcctaactcgtttaataaatgagtcaagcttgaactttttaaa 47304644  T
Q  277 aagcctattaatttaattagg 297  Q
    || ||||| ||||||||||||    
T  47304645 aatcctatcaatttaattagg 47304665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 193 - 298
Target Start/End: Original strand, 53994631 - 53994736
Alignment:
Q  193 tgtcaaggacctatgactcggtatactaaaagtccgattcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaa 292  Q
    ||||| || |||||| |||||  ||||||||| ||| || ||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||    
T  53994631 tgtcaggggcctatggctcggcctactaaaagcccggtttggcctaactcgtttaataaatgagtcaaagttgagctttttaaaaagcctattaatttaa 53994730  T
Q  293 ttaggc 298  Q
    ||||||    
T  53994731 ttaggc 53994736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 194 - 297
Target Start/End: Original strand, 47681643 - 47681746
Alignment:
Q  194 gtcaaggacctatgactcggtatactaaaagtccgattcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaat 293  Q
    ||||||| ||||||| ||||  |||||||||||||  |||||||| |||||||| |||||| |||||||||||| ||||||||||| |||||||||||||    
T  47681643 gtcaagggcctatgattcggcctactaaaagtccggctcggcctagctcgtttaataaatgggtcaagcttgagatttttaaaaagtctattaatttaat 47681742  T
Q  294 tagg 297  Q
    ||||    
T  47681743 tagg 47681746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 177 - 297
Target Start/End: Complemental strand, 15521875 - 15521755
Alignment:
Q  177 aataagtcaggccacctgtcaaggacctatgactcggtatactaaaagtccgattcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaa 276  Q
    |||| ||||| ||||  |||| || |||||||||| |  |||||||||||||  ||| ||||||| ||||| |||||| || || |||||||||||||||    
T  15521875 aataggtcagaccactcgtcaggggcctatgactcagcctactaaaagtccggctcgacctaacttgtttaataaatgggttaaacttgagctttttaaa 15521776  T
Q  277 aagcctattaatttaattagg 297  Q
    |||||||||||||||||||||    
T  15521775 aagcctattaatttaattagg 15521755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 177 - 296
Target Start/End: Complemental strand, 34458775 - 34458656
Alignment:
Q  177 aataagtcaggccacctgtcaaggacctatgactcggtatactaaaagtccgattcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaa 276  Q
    |||| |||||||| |  |||| || |||||| |||||  || ||||||| ||  ||||||||||||||||| |||||| ||||| |||||||||||||||    
T  34458775 aataggtcaggccgctcgtcaggggcctatggctcggcctagtaaaagttcgggtcggcctaactcgtttaataaatgggtcaaacttgagctttttaaa 34458676  T
Q  277 aagcctattaatttaattag 296  Q
     |||||||||||||||||||    
T  34458675 gagcctattaatttaattag 34458656  T

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Target: chr4; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 231 - 298
Target Start/End: Original strand, 43137143 - 43137210
Alignment:
Q  231 tcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaattaggc 298  Q
    |||||||| |||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  43137143 tcggcctagctcgtttaataaatgtgtcaagcttgagctttttaaaaaccctattaatttaattaggc 43137210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 1458834 - 1458766
Alignment:
Q  230 ttcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaattaggc 298  Q
    ||||||||| |||||||| ||||||||| || |||||||||||| |||| |||||||||||||||||||    
T  1458834 ttcggcctagctcgtttaataaatgagttaaacttgagcttttttaaaaacctattaatttaattaggc 1458766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 297
Target Start/End: Complemental strand, 23602484 - 23602417
Alignment:
Q  230 ttcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaattagg 297  Q
    |||||||||||||||||| ||||||||| ||  |||| |||||||||||| |||||||||||||||||    
T  23602484 ttcggcctaactcgtttaataaatgagttaaatttgaactttttaaaaagtctattaatttaattagg 23602417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 297
Target Start/End: Original strand, 19901510 - 19901588
Alignment:
Q  219 taaaagtccgattcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaattagg 297  Q
    ||||||| |||| ||  |||||||||||| |||||  ||||||||||||||||||||||||| ||||||||||| ||||    
T  19901510 taaaagttcgatccgaactaactcgtttaataaataggtcaagcttgagctttttaaaaagcatattaatttaaatagg 19901588  T

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Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 13610884 - 13610941
Alignment:
Q  235 cctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaa 292  Q
    ||||||||||||| |||||  ||||| | ||||||||||||||||| |||||||||||    
T  13610884 cctaactcgtttaataaataggtcaaacatgagctttttaaaaagcttattaatttaa 13610941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 292
Target Start/End: Original strand, 31763264 - 31763354
Alignment:
Q  202 cctatgactcggtatactaaaagtccgattcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaa 292  Q
    ||||||| ||||  ||||||||| ||||  || |||||||| |||| |||||  || ||   |||||||||||||||||||||||||||||    
T  31763264 cctatgattcggcctactaaaagcccgacccgacctaactcatttaataaataggttaaatatgagctttttaaaaagcctattaatttaa 31763354  T

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Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 202 - 298
Target Start/End: Original strand, 16719676 - 16719772
Alignment:
Q  202 cctatgactcggtatactaaaagtccgattcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaattaggc 298  Q
    |||||| |||||  ||||||||||| |  || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16719676 cctatggctcggcctactaaaagtctggctcagcctaactcgtttaataaatgagtcaagcttgagctttttaaaaagcctattaatttaattaggc 16719772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 202 - 298
Target Start/End: Original strand, 34583014 - 34583110
Alignment:
Q  202 cctatgactcggtatactaaaagtccgattcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaattaggc 298  Q
    |||||| |||||  |||||||||  ||  ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34583014 cctatggctcggcctactaaaagctcggctcggcctaactcgtttaatcaatgagtcaagcttgagctttttaaaaagcctattaatttaattaggc 34583110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 199 - 289
Target Start/End: Complemental strand, 12621951 - 12621861
Alignment:
Q  199 ggacctatgactcggtatactaaaagtccgattcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatt 289  Q
    ||||||||| |||||  ||||||||||| | || |||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  12621951 ggacctatggctcggcctactaaaagtctggtttggcctagctcgtttaataaatgagtcaagtttgagctttttaaaaagcctattaatt 12621861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 10542396 - 10542335
Alignment:
Q  231 tcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaa 292  Q
    ||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  10542396 tcggcttaactcgtttaataaatgggtcaagcttgagctttttaaaaagcctattaatttaa 10542335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 298
Target Start/End: Complemental strand, 31224335 - 31224231
Alignment:
Q  194 gtcaaggacctatgactcggtatactaaaagtccgattcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaat 293  Q
    |||| |||||||||  ||||| || |||||||||   ||||||||||||||||| |||||| || || ||||| ||||| |||||| ||||||||| |||    
T  31224335 gtcatggacctatggttcggtctattaaaagtcctgctcggcctaactcgtttaataaatgggttaaacttgaacttttaaaaaagtctattaattcaat 31224236  T
Q  294 taggc 298  Q
    |||||    
T  31224235 taggc 31224231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 298
Target Start/End: Original strand, 40897037 - 40897119
Alignment:
Q  216 tactaaaagtccgattcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaattaggc 298  Q
    |||||||||  || |||||||||  ||||||| |||||| ||||| ||| ||||||||||||| | | |||||||||||||||    
T  40897037 tactaaaagctcggttcggcctagttcgtttaataaatgggtcaaacttaagctttttaaaaatcttgttaatttaattaggc 40897119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 298
Target Start/End: Complemental strand, 5927283 - 5927187
Alignment:
Q  202 cctatgactcggtatactaaaagtccgattcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaattaggc 298  Q
    ||||||||||||| ||||||||  ||||  |  |||||| |||||| |||||  ||||| ||| ||||||||||||| |||||| |||||| |||||    
T  5927283 cctatgactcggtctactaaaaacccgacccaacctaacccgtttaataaataggtcaaactttagctttttaaaaaacctattcatttaaataggc 5927187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 184 - 287
Target Start/End: Original strand, 53199961 - 53200064
Alignment:
Q  184 caggccacctgtcaaggacctatgactcggtatactaaaagtccgattcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagccta 283  Q
    |||||| || ||||||| |||||| |||||  |||||||||||||| || ||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  53199961 caggccgcccgtcaagggcctatggctcggcttactaaaagtccgactctgcctatctcgtttaataaatgagtcaagcttgagctttttaaaaagccta 53200060  T
Q  284 ttaa 287  Q
    ||||    
T  53200061 ttaa 53200064  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 202 - 298
Target Start/End: Complemental strand, 9798641 - 9798545
Alignment:
Q  202 cctatgactcggtatactaaaagtccgattcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaattaggc 298  Q
    ||||||||||||  ||| |||||| || ||||  ||| |||||||| ||||||| | |||||||||||||||||||||||| |||||||||||||||    
T  9798641 cctatgactcggcctacaaaaagttcggttcgatctagctcgtttaataaatgatttaagcttgagctttttaaaaagccttttaatttaattaggc 9798545  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 297
Target Start/End: Complemental strand, 44028314 - 44028256
Alignment:
Q  239 actcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaattagg 297  Q
    ||||||||| |||||| |||||| ||||||||||||||||||||||| |||||||||||    
T  44028314 actcgtttaataaatgggtcaagtttgagctttttaaaaagcctatttatttaattagg 44028256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 317
Target Start/End: Original strand, 54739189 - 54739273
Alignment:
Q  233 ggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaattaggcatggtttatgattataaaa 317  Q
    ||||||||||||||| |||||  ||||| | |||| ||||||||||| ||||| |||||| | |||  |||||||| ||||||||    
T  54739189 ggcctaactcgtttaataaataggtcaaacatgagttttttaaaaagtctatttatttaaatgggctaggtttatgcttataaaa 54739273  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 194 - 292
Target Start/End: Complemental strand, 30491209 - 30491111
Alignment:
Q  194 gtcaaggacctatgactcggtatactaaaagtccgattcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaa 292  Q
    |||| ||||||||| |||||  ||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| ||||    
T  30491209 gtcagggacctatggctcggcctactaaaagtccggttcggcctaacttgtttaataaatgagtcaagcttgagctttttaaaaagtctattaacttaa 30491111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 202 - 298
Target Start/End: Original strand, 38855125 - 38855221
Alignment:
Q  202 cctatgactcggtatactaaaagtccgattcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaattaggc 298  Q
    |||||| |||||  ||||||||| | |  ||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38855125 cctatggctcggcctactaaaagccaggctcgacctaactcgtttaaaaaatgagtcaagcttgagctttttaaaaagcctattaatttaattaggc 38855221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 231 - 297
Target Start/End: Original strand, 40355562 - 40355628
Alignment:
Q  231 tcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaattagg 297  Q
    ||||||||||||||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||    
T  40355562 tcggcctaactcgtttaataaatgggtcaaacttgagctttttaaaaagcctactaatttaattagg 40355628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 295
Target Start/End: Complemental strand, 38120074 - 38119981
Alignment:
Q  202 cctatgactcggtatactaaaagtccgattcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaatta 295  Q
    |||||| |||||  ||| |||||||||  |||||||| | | |||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  38120074 cctatggctcggcttacaaaaagtccggctcggcctagcccatttaataaatgggtcaagcttgagctttttaaaaagcctattaatttaatta 38119981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 298
Target Start/End: Complemental strand, 34640595 - 34640499
Alignment:
Q  202 cctatgactcggtatactaaaagtccgattcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaattaggc 298  Q
    |||||| |||||  ||||||||| |||  ||| |||| |||| ||| ||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  34640595 cctatggctcggcctactaaaagcccggctcgacctagctcgattaataaataagtcaaacttgagctttttaaaaagcctattaatttaaataggc 34640499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 298
Target Start/End: Original strand, 38064468 - 38064550
Alignment:
Q  216 tactaaaagtccgattcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaattaggc 298  Q
    ||||||||  ||||||| |||||  ||||||| ||||| ||| |||||||| |||||||||||| ||||||||||||||||||    
T  38064468 tactaaaaacccgattcagcctagttcgtttaataaataagttaagcttgaactttttaaaaagtctattaatttaattaggc 38064550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 12069124 - 12069075
Alignment:
Q  249 taaatgagtcaagcttgagctttttaaaaagcctattaatttaattaggc 298  Q
    |||||| || ||| ||||||||||||||||||||||||||||||||||||    
T  12069124 taaatgggttaagtttgagctttttaaaaagcctattaatttaattaggc 12069075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 297
Target Start/End: Original strand, 41533417 - 41533498
Alignment:
Q  216 tactaaaagtccgattcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaattagg 297  Q
    |||||||||| ||  ||||||||  ||||||| |||||  | ||||||||||||||||||||||| ||||||||||| ||||    
T  41533417 tactaaaagttcggctcggcctagatcgtttaataaataggccaagcttgagctttttaaaaagcttattaatttaaatagg 41533498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 216 - 297
Target Start/End: Original strand, 38669553 - 38669634
Alignment:
Q  216 tactaaaagtccgattcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaattagg 297  Q
    ||||||||| ||| | ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38669553 tactaaaagcccggtccggcctagctcgtttaataaatgagtcaagcttgagctttttaaaaagcctattaatttaattagg 38669634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 233 - 317
Target Start/End: Complemental strand, 9857361 - 9857278
Alignment:
Q  233 ggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaattaggcatggtttatgattataaaa 317  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||  |||||| | ||||||||    
T  9857361 ggcctaactcgtttaataaatgagtcaagcttgagctttttaaaaa-cctattaatttaattaggccgggtttaggcttataaaa 9857278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 236 - 292
Target Start/End: Complemental strand, 8772601 - 8772545
Alignment:
Q  236 ctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaa 292  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8772601 ctaactcgtttaataaatgagtcaagcttgagctttttaaaaagcctattaatttaa 8772545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 203 - 297
Target Start/End: Complemental strand, 51127198 - 51127104
Alignment:
Q  203 ctatgactcggtatactaaaagtccgattcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaattagg 297  Q
    ||||| |||||  |||||| |||||  || ||||||||||||||| |||||| ||||||||| |||||||||||||| |||||||||||||||||    
T  51127198 ctatggctcggcctactaatagtccagtttggcctaactcgtttaataaatgtgtcaagcttaagctttttaaaaaggctattaatttaattagg 51127104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 3289654 - 3289597
Alignment:
Q  240 ctcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaattagg 297  Q
    |||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||    
T  3289654 ctcgtttaataaatgagtcaagcttaatctttttaaaaagcctattaatttaattagg 3289597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 297
Target Start/End: Original strand, 40707733 - 40707846
Alignment:
Q  184 caggccacctgtcaaggacctatgactcggtatactaaaagtccgattcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagccta 283  Q
    |||||| || |||| || |||||| |||||  |||| |||| |||  ||||||||||| ||||| | |||||||||||||||||||||||||||| ||||    
T  40707733 caggccgcccgtcaggggcctatggctcggcttactgaaagcccggctcggcctaacttgtttaatgaatgagtcaagcttgagctttttaaaaaaccta 40707832  T
Q  284 ttaatttaattagg 297  Q
    | |||||| |||||    
T  40707833 tcaatttatttagg 40707846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 297
Target Start/End: Original strand, 13258751 - 13258855
Alignment:
Q  193 tgtcaaggacctatgactcggtatactaaaagtccgattcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaa 292  Q
    ||||| || |||||| |||||  ||||||||| |||  |  |||||||||||||| ||||||||||||||||| ||||      ||||||||||||||||    
T  13258751 tgtcaggggcctatggctcggcttactaaaagcccggcttagcctaactcgtttaataaatgagtcaagcttgggcttaggctcaagcctattaatttaa 13258850  T
Q  293 ttagg 297  Q
    |||||    
T  13258851 ttagg 13258855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 234 - 297
Target Start/End: Complemental strand, 16576695 - 16576632
Alignment:
Q  234 gcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaattagg 297  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16576695 gcctaactcgtttaataaatgagtcaagcttgagctttataaaaagcctattaatttaattagg 16576632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 292
Target Start/End: Original strand, 29909313 - 29909389
Alignment:
Q  216 tactaaaagtccgattcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaa 292  Q
    ||||||||||| || ||||||||||||||||| |||||  ||||||| ||||||||||||||| |||||||||||||    
T  29909313 tactaaaagtctgactcggcctaactcgtttaataaataggtcaagcatgagctttttaaaaatcctattaatttaa 29909389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 236 - 297
Target Start/End: Complemental strand, 29443113 - 29443052
Alignment:
Q  236 ctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaattagg 297  Q
    |||||||||||| |||||| |||||| |||| ||||||||||||||||||||||||||||||    
T  29443113 ctaactcgtttaataaatgggtcaagtttgaactttttaaaaagcctattaatttaattagg 29443052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 291
Target Start/End: Original strand, 18311157 - 18311232
Alignment:
Q  216 tactaaaagtccgattcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaattta 291  Q
    ||||||||||| |  || |||||||||||||| ||||||| ||| |||||| ||||||||||||  ||||||||||    
T  18311157 tactaaaagtctgtctcagcctaactcgtttaataaatgactcatgcttgaactttttaaaaagtttattaattta 18311232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 292
Target Start/End: Complemental strand, 6636285 - 6636227
Alignment:
Q  234 gcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaa 292  Q
    |||| |||| |||| |||||  ||||||| |||||||||||||||||||||||||||||    
T  6636285 gccttactcatttaataaataggtcaagcatgagctttttaaaaagcctattaatttaa 6636227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 6628481 - 6628428
Alignment:
Q  239 actcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaa 292  Q
    |||| |||| |||||  ||||| | |||||||||||||||||||||||||||||    
T  6628481 actcatttaataaataggtcaaacatgagctttttaaaaagcctattaatttaa 6628428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 231 - 298
Target Start/End: Complemental strand, 9459296 - 9459229
Alignment:
Q  231 tcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaattaggc 298  Q
    |||||||| || ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9459296 tcggcctagcttgtttaataaatgagtcaagcttgagctttttaaaaagcctattgatttaattaggc 9459229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 298
Target Start/End: Original strand, 5738605 - 5738667
Alignment:
Q  236 ctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaattaggc 298  Q
    |||||||||||| |||||| |||||  ||||||||||||||||| ||||||||||||||||||    
T  5738605 ctaactcgtttaataaatgggtcaaatttgagctttttaaaaagtctattaatttaattaggc 5738667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 12218684 - 12218623
Alignment:
Q  231 tcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaa 292  Q
    |||||||| |||||||| |||||||||||| ||| |||||||||||||| ||||||||||||    
T  12218684 tcggcctatctcgtttaataaatgagtcaaacttaagctttttaaaaagactattaatttaa 12218623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 9626362 - 9626305
Alignment:
Q  235 cctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaa 292  Q
    ||||||||||||| |||||  ||||| | ||||||||||||||||| |||||||||||    
T  9626362 cctaactcgtttaataaataggtcaaacatgagctttttaaaaagcttattaatttaa 9626305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 292
Target Start/End: Original strand, 3525501 - 3525561
Alignment:
Q  232 cggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaa 292  Q
    |||||||||||||||| |||||  |||| || |||| ||||||||||| ||||||||||||    
T  3525501 cggcctaactcgtttaataaataggtcaggcatgagatttttaaaaagtctattaatttaa 3525561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 297
Target Start/End: Original strand, 4919710 - 4919773
Alignment:
Q  234 gcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaattagg 297  Q
    ||||| |||||||| || |||  |||| ||||| ||||||||||||||||||||||||| ||||    
T  4919710 gcctagctcgtttaatagatggatcaaacttgaactttttaaaaagcctattaatttaaatagg 4919773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 292
Target Start/End: Original strand, 3406170 - 3406226
Alignment:
Q  236 ctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaa 292  Q
    ||||||| |||| |||||  || |||| ||||||||||||||| |||||||||||||    
T  3406170 ctaactcatttaataaataggttaagcatgagctttttaaaaaacctattaatttaa 3406226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 292
Target Start/End: Original strand, 27157105 - 27157181
Alignment:
Q  216 tactaaaagtccgattcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaa 292  Q
    |||| ||||| |||| || ||||||||||||| ||| |  | ||| | | |||||||||||||||||||||||||||    
T  27157105 tactgaaagttcgatccgacctaactcgtttaataactcggccaaacataagctttttaaaaagcctattaatttaa 27157181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 184 - 297
Target Start/End: Original strand, 16166213 - 16166327
Alignment:
Q  184 caggccacctgtcaaggacctatgactcggtatactaaaagtccgattcggcctaactcgtttagtaaatgagtcaagcttgagc-tttttaaaaagcct 282  Q
    |||||| || |||| || |||||| |||||  |||||||||  ||  |||||||| || ||||| |||||||||||||||||||| ||||||||||||||    
T  16166213 caggccgcccgtcaggggcctatggctcggcctactaaaagctcggctcggcctagcttgtttaataaatgagtcaagcttgagcttttttaaaaagcct 16166312  T
Q  283 attaatttaattagg 297  Q
    ||||| |||||||||    
T  16166313 attaacttaattagg 16166327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 230 - 295
Target Start/End: Complemental strand, 697949 - 697884
Alignment:
Q  230 ttcggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaatta 295  Q
    ||||| ||| |||||||| |||||||||||||||||||||||||||||| | ||||||||||||||    
T  697949 ttcggtctagctcgtttaataaatgagtcaagcttgagctttttaaaaaacttattaatttaatta 697884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 232 - 292
Target Start/End: Complemental strand, 15055995 - 15055935
Alignment:
Q  232 cggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaa 292  Q
    |||||||||||||||| |||||  ||||||| |||||||||||||||| ||| ||||||||    
T  15055995 cggcctaactcgtttaataaataggtcaagcatgagctttttaaaaagtctaataatttaa 15055935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 297
Target Start/End: Original strand, 30591368 - 30591431
Alignment:
Q  234 gcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaatttaattagg 297  Q
    ||||| |||||||| |||||| |||||  ||||||||||||||||||||||||| |||| ||||    
T  30591368 gcctagctcgtttaataaatgggtcaaatttgagctttttaaaaagcctattaaattaaatagg 30591431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 291
Target Start/End: Original strand, 6138618 - 6138676
Alignment:
Q  233 ggcctaactcgtttagtaaatgagtcaagcttgagctttttaaaaagcctattaattta 291  Q
    ||||||||||||||| |||||  ||||| | |||||||||||||||| |||||||||||    
T  6138618 ggcctaactcgtttaataaataggtcaaacatgagctttttaaaaagtctattaattta 6138676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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