View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0953_low_59 (Length: 346)

Name: NF0953_low_59
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0953_low_59
NF0953_low_59
[»] chr8 (3 HSPs)
chr8 (8-317)||(1089549-1089867)
chr8 (55-129)||(18964974-18965048)
chr8 (55-125)||(18952431-18952501)
[»] chr3 (3 HSPs)
chr3 (8-317)||(5129047-5129365)
chr3 (8-125)||(26569666-26569783)
chr3 (8-61)||(9689121-9689174)
[»] chr7 (1 HSPs)
chr7 (55-113)||(46841773-46841831)
[»] chr4 (1 HSPs)
chr4 (55-113)||(56290375-56290433)
[»] scaffold0004 (1 HSPs)
scaffold0004 (94-131)||(35895-35932)
[»] chr6 (1 HSPs)
chr6 (55-131)||(8366198-8366274)
[»] chr2 (1 HSPs)
chr2 (86-130)||(3216507-3216551)


Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 8 - 317
Target Start/End: Complemental strand, 1089867 - 1089549
Alignment:
Q  8 ccaataatatacaactagtacaagttatcgagttactactgataagtccgctttccccttctgccacgcgccaacgttgcctgtcgcggtggtcctgatt 107  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1089867 ccaattatatacaactagtacaagttatcgagttactactgataagtccgctttccccttctgccacgcgccaacgttgcctgtcgcggtggtcctgatt 1089768  T
Q  108 tttccgttatagcggccggcgcggacttttttgacagtagaggtggtaattatggtgtaaagctatttaaaatgccatttgtttttcattcatcaacaca 207  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1089767 tttccgttatggcggccggcgcggccttttttgacagtagaggtggtaattatggtgtaaagctatttaaaatgccatttgtttttcattcatcaacaca 1089668  T
Q  208 agtttgatttttctcatacttaacattaattattacccagtaagcattgatg---------gagacccaacgggtgaggaaatatgagctactcaaattt 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||    
T  1089667 agtttgatttttctcatacttaacattaattattacccagtaagcattgatggaaaccaatgagacccaacgggtgaggaaatatgagctactcaaattt 1089568  T
Q  299 tcctttttatggcaattgg 317  Q
    |||||||||||||||||||    
T  1089567 tcctttttatggcaattgg 1089549  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 129
Target Start/End: Original strand, 18964974 - 18965048
Alignment:
Q  55 ccgctttccccttctgccacgcgccaacgttgcctgtcgcggtggtcctgatttttccgttatagcggccggcgc 129  Q
    |||||||||||||||| ||||| || |||  ||||  ||||||||||  |||||||||| |||||||||||||||    
T  18964974 ccgctttccccttctggcacgcaccgacgcggcctagcgcggtggtctagatttttccgctatagcggccggcgc 18965048  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 18952501 - 18952431
Alignment:
Q  55 ccgctttccccttctgccacgcgccaacgttgcctgtcgcggtggtcctgatttttccgttatagcggccg 125  Q
    |||||||||||||||| |||||||| |||  ||||  || |||||||  |||||||||| |||||||||||    
T  18952501 ccgctttccccttctgacacgcgccgacgcggcctagcgtggtggtctagatttttccgctatagcggccg 18952431  T

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Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 8 - 317
Target Start/End: Original strand, 5129047 - 5129365
Alignment:
Q  8 ccaataatatacaactagtacaagttatcgagttactactgataagtccgctttccccttctgccacgcgccaacgttgcctgtcgcggtggtcctgatt 107  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5129047 ccaattatatacatctagtacaagttatcgagttactactgataagtccgctttccccttctgccacgcgccaacgttgcctgtcgcggtggtcctgatt 5129146  T
Q  108 tttccgttatagcggccggcgcggacttttttgacagtagaggtggtaattatggtgtaaagctatttaaaatgccatttgtttttcattcatcaacaca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5129147 tttccgttatagcggccggcgcggacttttttgacagtagaggtggtaattatggtgtaaagctatttaaaatgccatttgtttttcattcatcaacaca 5129246  T
Q  208 agtttgatttttctcatacttaacattaattattacccagtaagcattgatg---------gagacccaacgggtgaggaaatatgagctactcaaattt 298  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||         |||||||||||||||||||||||||||||||||||||||    
T  5129247 agtttgatttttctcatacttaacattaattattacccagcaagcattgatggaaaccaatgagacccaacgggtgaggaaatatgagctactcaaattt 5129346  T
Q  299 tcctttttatggcaattgg 317  Q
    |||||||||||||||||||    
T  5129347 tcctttttatggcaattgg 5129365  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 26569783 - 26569666
Alignment:
Q  8 ccaataatatacaactagtacaagttatcgagttactactgataagtccgctttccccttctgccacgcgccaacgttgcctgtcgcggtggtcctgatt 107  Q
    ||||| ||||||||| |||||||||||| |  |||||| | ||| ||||||||| | |||||| ||||| || |||  |||||  |||||||||||||||    
T  26569783 ccaattatatacaaccagtacaagttattgttttactatttataggtccgcttttcacttctgacacgcaccgacgcggcctggtgcggtggtcctgatt 26569684  T
Q  108 tttccgttatagcggccg 125  Q
    |||||| |||||||||||    
T  26569683 tttccgctatagcggccg 26569666  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 9689121 - 9689174
Alignment:
Q  8 ccaataatatacaactagtacaagttatcgagttactactgataagtccgcttt 61  Q
    ||||| |||||||||||||||||||||| || |||||| | ||| |||||||||    
T  9689121 ccaattatatacaactagtacaagttattgatttactatttataggtccgcttt 9689174  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 46841831 - 46841773
Alignment:
Q  55 ccgctttccccttctgccacgcgccaacgttgcctgtcgcggtggtcctgatttttccg 113  Q
    ||||||||| ||| |||||||||||||||  ||||| ||||||||||||||||||||||    
T  46841831 ccgctttccacttatgccacgcgccaacgcggcctggcgcggtggtcctgatttttccg 46841773  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 56290433 - 56290375
Alignment:
Q  55 ccgctttccccttctgccacgcgccaacgttgcctgtcgcggtggtcctgatttttccg 113  Q
    ||||||||| |||||| |||||||| |||  |||||  |||||||||||||||||||||    
T  56290433 ccgctttccacttctgacacgcgccgacgcggcctggtgcggtggtcctgatttttccg 56290375  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 35895 - 35932
Alignment:
Q  94 cggtggtcctgatttttccgttatagcggccggcgcgg 131  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  35895 cggtggtcctgatttttccgctatagcggtcggcgcgg 35932  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 8366198 - 8366274
Alignment:
Q  55 ccgctttccccttctgccacgcgccaacgttgcctgtcgcggtggtcctgatttttccgttatagcggccggcgcgg 131  Q
    ||||||||| |||||| || | ||| |||  |||||  ||||||||||||||||||||  ||||||||| |||||||    
T  8366198 ccgctttccacttctgacatgtgccgacgcggcctggtgcggtggtcctgatttttccactatagcggctggcgcgg 8366274  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 3216551 - 3216507
Alignment:
Q  86 gcctgtcgcggtggtcctgatttttccgttatagcggccggcgcg 130  Q
    ||||| |||||||||||||||||||| | |||||| |||||||||    
T  3216551 gcctggcgcggtggtcctgatttttctgctatagcagccggcgcg 3216507  T

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