View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_low_6 (Length: 546)
Name: NF0953_low_6
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 30 - 536
Target Start/End: Original strand, 49391829 - 49392335
Alignment:
| Q |
30 |
ataatcttgggatggatggggttgtagcctgagttctttcaacgcattcttattagtgaaccatccatgagaaagagggagagcagaatccacatgttca |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49391829 |
ataatcttgggatggatggggttgtagcctgagttctttcaacgcattcttattagtgaaccatccatgagaaagagggagagcataatccacatgttca |
49391928 |
T |
|
| Q |
130 |
aagatgaaggtctttaaagccacatcgattgtgcaagggtgaagtgtaacattcttgcatgtaagattaagagccctaggaaaagtatccttatgatagc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49391929 |
aagatgaaggtctttaaagccacatcgattgtgcaagggtgaagtgtaacattcttgcatgtaagattaagagccctaggaaaagtatccttatgatagc |
49392028 |
T |
|
| Q |
230 |
tttgggtttgggaaaaaagaactgaaatgataaataggcacaaatttcatgacacaatacatacaccaagggtaatttggatatttcacccttaaagcgg |
329 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
49392029 |
tttgggtttgggaaaaaagaactgaaatgataaatagacacaaatttcatgacacaatacagacaccaagggtaatttggatatttcacccttaaagcgg |
49392128 |
T |
|
| Q |
330 |
gggtagttttgtaaatgcacgacaatcctcttcttcctgtctcttcctcctttctttactgcgtgtattttctttcccccaccatcctcgttacaaccgc |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
49392129 |
gggtagttttgtaaatgcacgacaatcctcttcttcctgtctcttcctcctttctttactgcgtgtgttttctttcccccaccgtcctcgttacaaccgc |
49392228 |
T |
|
| Q |
430 |
catcgcaacagcgaccaccaccctttcaatggacactcgttctcttctacccttcctcttcgtcatcgttacactcttcccgtcaccaccatcaactctt |
529 |
Q |
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|||||||||| ||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
49392229 |
catcgcaacaacgaccaccaccctctcaacgaacactcgttctcttctacccttcctcttcgtcatcgttacactcttcccgtcaccaccataaactctt |
49392328 |
T |
|
| Q |
530 |
gtctctg |
536 |
Q |
| |
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|| |||| |
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| T |
49392329 |
gtgtctg |
49392335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 253 - 407
Target Start/End: Original strand, 51312020 - 51312174
Alignment:
| Q |
253 |
gaaatgataaataggcacaaa-tttcatgacacaatacatacaccaagggtaatttggatatttcacccttaaagcgggggtagttttgtaaatgcacga |
351 |
Q |
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|||||||||| ||| |||||| ||||| |||||||| | ||| || |||||||||||||||||||||||| || | |||| | |||||||||| ||| | |
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| T |
51312020 |
gaaatgataagtagacacaaactttcaa-acacaataaagacagcatgggtaatttggatatttcaccctttaaacaggggcaattttgtaaatacacca |
51312118 |
T |
|
| Q |
352 |
caatcctcttcttcctgtctcttcctcctttctttactgcgtgtattttctttccc |
407 |
Q |
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||| | |||| ||| | ||||||| |||| ||| | || |||| ||||||||||| |
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|
| T |
51312119 |
caaccatctttttcttctctcttcttcctctctcttctctgtgtgttttctttccc |
51312174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 254 - 536
Target Start/End: Original strand, 31726296 - 31726579
Alignment:
| Q |
254 |
aaatgataaataggcacaaatttcat-gacacaatacatacaccaagggtaatttggatatttcacccttaaagcgggggtagttttgtaaatgcacgac |
352 |
Q |
| |
|
||||||||||||| ||| ||||| | ||||||||||||||| |||| |||||||||||||||||||||||||| |||| ||| |||||||||||| || |
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| T |
31726296 |
aaatgataaatagacactgatttcttagacacaatacatacattaaggataatttggatatttcacccttaaagcaggggcagtgttgtaaatgcaccac |
31726395 |
T |
|
| Q |
353 |
aatcctcttcttcctgtctcttcctcctttctttactgcgtgtattttctttcccccaccatcctcgttacaaccgccatcgcaacagcgaccaccaccc |
452 |
Q |
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|||||||||||||||||||||||||||||||||| ||| || | ||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
31726396 |
aatcctcttcttcctgtctcttcctcctttcttttctgtgtttgttttctttccctcaccgtcctcgttataaccgccatcgcaacagcgaccaccaccc |
31726495 |
T |
|
| Q |
453 |
tttcaatggacactcgttctcttctacccttcctcttcgtcatcgttacactcttcccgtcaccaccatcaactcttgtctctg |
536 |
Q |
| |
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| || |||| ||||||||| |||||||| | |||||||||||||| | | ||| |||| ||||||||||||||||| |||| |
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| T |
31726496 |
tctcggcggacgctcgttctcctctaccctccgacttcgtcatcgttaaattgttctcgtcgccaccatcaactcttgtgtctg |
31726579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 257 - 367
Target Start/End: Original strand, 22278605 - 22278715
Alignment:
| Q |
257 |
tgataaataggcacaaatttcatgacacaatacatacaccaagggtaatttggatatttcacccttaaagcgggggtagttttgtaaatgcacgacaatc |
356 |
Q |
| |
|
|||||||||| ||||| ||| |||||||||||| |||||| |||||||||||||||||||| |||||||| || |||||||||||| ||| |||| | |
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| T |
22278605 |
tgataaatagacacaatttttttgacacaatacagacaccatgggtaatttggatatttcactcttaaagcatggacagttttgtaaatacaccacaacc |
22278704 |
T |
|
| Q |
357 |
ctcttcttcct |
367 |
Q |
| |
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||||||||||| |
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| T |
22278705 |
ctcttcttcct |
22278715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 536
Target Start/End: Original strand, 22278805 - 22278854
Alignment:
| Q |
487 |
cttcgtcatcgttacactcttcccgtcaccaccatcaactcttgtctctg |
536 |
Q |
| |
|
||||||||||| | |||||||||||| ||||||||||||||||| |||| |
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| T |
22278805 |
cttcgtcatcgccaaactcttcccgtcgccaccatcaactcttgtgtctg |
22278854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 404 - 451
Target Start/End: Original strand, 22278748 - 22278793
Alignment:
| Q |
404 |
tcccccaccatcctcgttacaaccgccatcgcaacagcgaccaccacc |
451 |
Q |
| |
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||||||||| |||||||||||||||| || ||||||||||||||||| |
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|
| T |
22278748 |
tcccccaccgtcctcgttacaaccgctat--caacagcgaccaccacc |
22278793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 292 - 380
Target Start/End: Original strand, 47531744 - 47531832
Alignment:
| Q |
292 |
acaccaagggtaatttggatatttcacccttaaagcgggggtagttttgtaaatgcacgacaatcctcttcttcctgtctcttcctcct |
380 |
Q |
| |
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|||||| || ||||||||||||||||||||| || | |||| | |||||||||| ||| ||||||||||||||| | ||||||| |||| |
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| T |
47531744 |
acaccatggataatttggatatttcaccctttaaacaggggcaattttgtaaatacaccacaatcctcttcttcttctctcttcttcct |
47531832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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