View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_low_60 (Length: 345)
Name: NF0953_low_60
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_60 |
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Alignment Details
Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 38 - 204
Target Start/End: Original strand, 12844295 - 12844459
Alignment:
| Q |
38 |
acggttagcgcaatttggaatttcccgcgccaggattcatttataaaacggttacaacaaccaatttcttcgtttcagagtttccacagnnnnnnnaaat |
137 |
Q |
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| T |
12844295 |
acggttagcgcaatttggaatttcccgcgccaggattcatttataaaacggttacaacaaccaatttcttcgtttcagagtttccacagttttttt--at |
12844392 |
T |
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| Q |
138 |
ttaatttatattaaaatgtaaaataaagttgcatttacttttaatattggggtttaattatctatga |
204 |
Q |
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| T |
12844393 |
ttaatttatattaaaatgtaaaataaagtcgcatttacttttaatattggggtttaattgtctatga |
12844459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 38 - 203
Target Start/End: Complemental strand, 12861222 - 12861058
Alignment:
| Q |
38 |
acggttagcgcaatttggaatttcccgcgccaggattcatttataaaacggttacaacaaccaatttcttcgtttcagagtttccacagnnnnnnnaaat |
137 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
12861222 |
acggttagagcaatttggaatttcccgcgccaggatttatttataaaacggttgtaacaaccaatttcttcgtttcagagtttccacagttttttt-tat |
12861124 |
T |
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| Q |
138 |
ttaatttatattaaaatgtaaaataaagttgcatttacttttaatattggggtttaattatctatg |
203 |
Q |
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| T |
12861123 |
ttaatttatattaaaatgtaaaataaagttgcatttacttttaatattggggtttaattatctatg |
12861058 |
T |
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