View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_low_62 (Length: 342)
Name: NF0953_low_62
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_62 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 30 - 342
Target Start/End: Complemental strand, 15394577 - 15394265
Alignment:
| Q |
30 |
caaattaaccaaaaagttggaaaacaatatataccttgaccattgtcatttgctcttaatacaatgaaaacatatttgagcagcggcacaagagtaagag |
129 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15394577 |
caaattaaccaaaatgttggaaaacaatatataccttgaccattgtcatttgctcttaatacaatgaaaacatatttgagcagtggcacaagagtaagag |
15394478 |
T |
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| Q |
130 |
agtatatgatcaaagaaagagctccaatcactttctccgaatcatcaactccataaggaaatgtgttatagaaaacgtataagggtgaagttcccagatc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15394477 |
agtatatgatcaaagaaagagctccaatcactttctccgaatcatcaactccataaggaaatgtgttatagaaaacgtataagggtgaagttcccagatc |
15394378 |
T |
|
| Q |
230 |
tccataaacgacaccaagactttgatatgccagtcgtagaagcaacagcacagaaaacttctgaaacaaatcaaaataacatagatcgaaaaattacgta |
329 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
15394377 |
tccataaacgacaccaagactttgatatgccagttgtagaagcaacagcgcagaaaacttctgaaacaaatcaaattaacatagatcgaaaaattactta |
15394278 |
T |
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| Q |
330 |
aaatcacttaaaa |
342 |
Q |
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||||||||||||| |
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| T |
15394277 |
aaatcacttaaaa |
15394265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 30 - 340
Target Start/End: Complemental strand, 15386143 - 15385832
Alignment:
| Q |
30 |
caaattaaccaaaaagttggaaaacaatatataccttgaccattgtcatttgctcttaatacaatgaaaacatatttgagcagcggcacaagagtaagag |
129 |
Q |
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||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
15386143 |
caaattaaccaaacagttggaaaacaatacataccttgaccattgtcgtttgctcttaatacaatgaaaacgtatttgagcagcggcacaagagtaagag |
15386044 |
T |
|
| Q |
130 |
agtatatgatcaaagaaagagctccaatcactttctccgaatcatcaactccataaggaaatgtgttatagaaaacgtataagggtgaagttcccagatc |
229 |
Q |
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|||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||| |||||||||| ||| |
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| T |
15386043 |
agtatatgatcaaagaaagagcgccaatcactttctccggatcatcaactccacgaggaaatgtgttatagaaaacatataagggcgaagttcccaaatc |
15385944 |
T |
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| Q |
230 |
tccataaacgacaccaagactttgatatgccagtcgtagaagcaacagcacagaaaacttctgaaacaaatcaaaataacatagatcga-aaaattacgt |
328 |
Q |
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||| ||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
15385943 |
tccgtaaactacaccaagactttgatatgctagtcgtagaagcaacagcgcagaaaacttctgaaacaaatcaaaataacatagatcgaaaaaattactt |
15385844 |
T |
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| Q |
329 |
aaaatcacttaa |
340 |
Q |
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|||||||||||| |
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| T |
15385843 |
aaaatcacttaa |
15385832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 49 - 294
Target Start/End: Original strand, 38669169 - 38669414
Alignment:
| Q |
49 |
gaaaacaatatataccttgaccattgtcatttgctcttaatacaatgaaaacatatttgagcagcggcacaagagtaagagagtatatgatcaaagaaag |
148 |
Q |
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||||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||| || ||||| | |||||||||||| || ||||||||||| |
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| T |
38669169 |
gaaaacaatcgataccttgtccattgtcatttgctcttaacacaataaaaacatatttgaggagaggcaccaaagtaagagagtagataatcaaagaaag |
38669268 |
T |
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| Q |
149 |
agctccaatcactttctccgaatcatcaactccataaggaaatgtgttatagaaaacgtataagggtgaagttcccagatctccataaacgacaccaaga |
248 |
Q |
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|||||||| |||| ||| ||| | || || | |||||| | || |||||||| || ||||||||||| |||| |||||||||||| || |||||| |
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| T |
38669269 |
agctccaagtacttcctcttcatctttcacgccgttcggaaatatattgtagaaaacatacaagggtgaagtgcccaaatctccataaaccacgccaaga |
38669368 |
T |
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| Q |
249 |
ctttgatatgccagtcgtagaagcaacagcacagaaaacttctgaa |
294 |
Q |
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|| |||||||| || || |||| ||||| ||||||| ||||||| |
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| T |
38669369 |
ctctgatatgcaagccgcagaatcaacaatgcagaaaatttctgaa |
38669414 |
T |
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