View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0953_low_64 (Length: 337)
Name: NF0953_low_64
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_64 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 30 - 337
Target Start/End: Original strand, 36740809 - 36741116
Alignment:
| Q |
30 |
atttgatgtgcatttgtacaccacgtagatccccaattaaattattaatttcggccatttagccatccacctattgcatttgctatccatttcatgtatc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36740809 |
atttgatgtgcatttgtacaccacgtagatccccaattaaattattaatttcggccatttagccatccacctattgcatttgctatccgtttcatgtatc |
36740908 |
T |
|
| Q |
130 |
tttcttagtcaccaaccaattagattatatggctcagcattatgcataatatatattcaagataattaaacattttgggattattatttcgacatcgttc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36740909 |
tttcttagtcaccaaccaattagattatatggctcagcattatgcataatatatattcaagataattaaacattttgggattattagttcgacatcgttc |
36741008 |
T |
|
| Q |
230 |
aatatagtaaaggaagtggaaaatcaatgttatatatattgacttaactcttccttataaatccatcgaaaataagtttgtattagattttcttattttg |
329 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36741009 |
aatataataaaggaagtgggaaatcaatgttatatatattgacttaactcttccttgtaaatccatcgaaaataagtttgtattaaattttcttattttg |
36741108 |
T |
|
| Q |
330 |
tcttatat |
337 |
Q |
| |
|
|||||||| |
|
|
| T |
36741109 |
tcttatat |
36741116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 194 - 337
Target Start/End: Original strand, 36741297 - 36741440
Alignment:
| Q |
194 |
attaaacattttgggattattatttcgacatcgttcaatatagtaaaggaagtggaaaatcaatgttatatatattgacttaactcttccttataaatcc |
293 |
Q |
| |
|
||||||||||||| |||||||| || |||||| | ||| |||||||||||| || || ||||||| |||||| ||||||||| ||||| ||||||||| |
|
|
| T |
36741297 |
attaaacattttgagattattagtttgacatcatctaatgtagtaaaggaagagggaagtcaatgtaatatatgttgacttaattcttcgttataaatct |
36741396 |
T |
|
| Q |
294 |
atcgaaaataagtttgtattagattttcttattttgtcttatat |
337 |
Q |
| |
|
||||||| |||||||||||| | |||||| |||| |||||||| |
|
|
| T |
36741397 |
gtcgaaaacaagtttgtattaaactttcttcttttatcttatat |
36741440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University