View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0953_low_67 (Length: 327)
Name: NF0953_low_67
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_67 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 73 - 282
Target Start/End: Original strand, 9431573 - 9431782
Alignment:
| Q |
73 |
tctaagagatttaacgttattgcatgttcaaaatgagaattaaactgaaaccttagaaaagatatgtataatatgatctaaatgttacgggattgtgatt |
172 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9431573 |
tctaagagatttaacgttattacatgttcaaaatgagaattaaactgaaaccttagaaaagatatgtataatatgatctaaatgttacgggattgtgatt |
9431672 |
T |
|
| Q |
173 |
gaatgtattagaaaagnnnnnnnnnncttaaaccctgattaaattagaagagatacatctacgctctttagattttggtgtatggataatatatcggata |
272 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9431673 |
gaatgtattagaaagaaaaaaaaaaacttaaaccctgattaaattagaagagatacatctacgctctttatattttggtgtatggataatatatcggata |
9431772 |
T |
|
| Q |
273 |
tgtccctgga |
282 |
Q |
| |
|
|||||||||| |
|
|
| T |
9431773 |
tgtccctgga |
9431782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 108 - 291
Target Start/End: Original strand, 9452545 - 9452719
Alignment:
| Q |
108 |
agaattaaactgaaaccttagaaaagatatgtataatatgatctaaatgttacgggattgtgattgaatgtattagaaaagnnnnnnnnnncttaaaccc |
207 |
Q |
| |
|
||||||||||| ||||||||||| ||||| | |||||| |||||||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
9452545 |
agaattaaactaaaaccttagaagagatacatgtaatatcatctaaatgttattggattgtgattgaatgtattaggaaa-------aaaacttaaacct |
9452637 |
T |
|
| Q |
208 |
tgattaaattagaagagatacatctacgctctttagattttggtgtatggataatatatcggatatgtccctggaataacctca |
291 |
Q |
| |
|
| ||||||||||||||||||| ||||| || |||||| |||||| |||||||||||||||||| | ||||| ||||||||||| |
|
|
| T |
9452638 |
taattaaattagaagagatacgtctacactttttagactttggtatatggataatatatcggaca--tcccttgaataacctca |
9452719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University