View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_low_71 (Length: 308)
Name: NF0953_low_71
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_71 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 30 - 298
Target Start/End: Complemental strand, 29227226 - 29226966
Alignment:
| Q |
30 |
cttcttatatattaataacaccaatagtttatttattctcttttcattttatttccttagagatcacaaagataagttaagaaacatgggaaacacagag |
129 |
Q |
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| T |
29227226 |
cttcttatatattaataacaccaatagtttatttattctcttttcatattttttccttagaga---caaagataag-----aaacatgggaaacacagag |
29227135 |
T |
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| Q |
130 |
agaattgaaagtatgaaggaatggttcaaatcatcacaagcacttcttagtatgttattagtgcaaatatttgcaactgggatgcaacttctatcaagag |
229 |
Q |
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| T |
29227134 |
agaattgaaagtatgaaggaatggttcaaatcatcacaagcacttcttagtatgttattagtgcaaatatttgcaactgggatgcaacttctatcaagag |
29227035 |
T |
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| Q |
230 |
tcattttggttcaagggacttacatttttgcactcattgcttatcgacatattgttgctgctatctgtg |
298 |
Q |
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| T |
29227034 |
tcattttggttcaagggacttacatttttgcactcattgcttatcgacatattgttgctgctatttgtg |
29226966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 88 - 298
Target Start/End: Original strand, 29144797 - 29145007
Alignment:
| Q |
88 |
agagatcacaaagataagttaagaaacatgggaaacacagagagaattgaaagtatgaaggaatggttcaaatcatcacaagcacttcttagtatgttat |
187 |
Q |
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| T |
29144797 |
agagatcacaaagataagttaagaaacatgggaaacacagagagaattgaaagtatgaaggaatggttcaaatcatcacaagcacttcttagtatgttat |
29144896 |
T |
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| Q |
188 |
tagtgcaaatatttgcaactgggatgcaacttctatcaagagtcattttggttcaagggacttacatttttgcactcattgcttatcgacatattgttgc |
287 |
Q |
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| T |
29144897 |
tagtgcaaatatttgcaactgggatgcaacttctatcaagagtcattttggttcaagggacttacatttttgcactcattgcttatcgacatattgttgc |
29144996 |
T |
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| Q |
288 |
tgctatctgtg |
298 |
Q |
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|||||| |||| |
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| T |
29144997 |
tgctatttgtg |
29145007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 121 - 291
Target Start/End: Complemental strand, 5307016 - 5306846
Alignment:
| Q |
121 |
aacacagagagaattgaaagtatgaaggaatggttcaaatcatcacaagcacttcttagtatgttattagtgcaaatatttgcaactgggatgcaacttc |
220 |
Q |
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||||||||||||| | |||||||||| |||||||||| || || ||||| |||||||| |||||||||||||||||||||| ||||||||| |||||| |
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| T |
5307016 |
aacacagagagaactcaaagtatgaaagaatggttcatctcttcccaagctcttcttagcatgttattagtgcaaatatttggaactgggatacaacttt |
5306917 |
T |
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| Q |
221 |
tatcaagagtcattttggttcaagggacttacatttttgcactcattgcttatcgacatattgttgctgct |
291 |
Q |
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||||||| ||||| |||||||| || |||| |||||||||||||| ||| |||||||| |||||||||||| |
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| T |
5306916 |
tatcaagggtcatcttggttcagggcactttcatttttgcactcaatgcatatcgacaaattgttgctgct |
5306846 |
T |
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