View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_low_74 (Length: 281)
Name: NF0953_low_74
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_74 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 43440789 - 43440518
Alignment:
| Q |
1 |
ctttctctaactcttcagaacaatcgttggtgtaaacacgctctaaaatcatgttgggttttgaagaaaaacagtgtttttgatgattgttgtgaaaacg |
100 |
Q |
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| T |
43440789 |
ctttctctaactcttcagaccaatcgttggtgtaaacacgctctaaaatcatgttgggttttgaagaaaaacagtgtttttgatgattgttgtgaaaacg |
43440690 |
T |
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| Q |
101 |
gaatagatcgtgtgaatgattcaaaagagggattgaaaatgtgaaagaagagaagtgagtaacctggttcggagtagcgagtgattttgatgatttgagg |
200 |
Q |
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| T |
43440689 |
gaatagatcgtgtgaatgattcaaaagagggattgaaaaagtgaaagaagagaagtgagtaacctgattcggagtagagagtgattttgatgatttgagg |
43440590 |
T |
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| Q |
201 |
aatctgagggaagtagttattgctttcacgcgattcatcgttaaagcttggagggatttgttgttcctatgc |
272 |
Q |
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| T |
43440589 |
aatctgagggaagtagttattgctttcacgcgattcatcgtaaaagcttggagggatttgttgttcctatgc |
43440518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 43434922 - 43434742
Alignment:
| Q |
1 |
ctttctctaactcttcagaacaatcgttggtgtaaacacgctctaaaatcatgttgggttttgaagaaaaacagtgtttttgatgattgttgtgaaaacg |
100 |
Q |
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| T |
43434922 |
ctttctctaactcttcagaccaatcattggtaaaaacacgctccaaaatcatgttgggttttgaagaaaaatagtgtttttgatgattgttgtgaaaaca |
43434823 |
T |
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| Q |
101 |
gaatagatcgtgtgaatgattcaaaagagggattgaaaatgtgaaagaagagaagtgagtaacctggttcggagtagcgag |
181 |
Q |
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| T |
43434822 |
taacaaatctttggatcggttcaaaagagggagtgaaaaagaggaagaagaaaagtgagaaacctggttccgagttgcgag |
43434742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 43426417 - 43426250
Alignment:
| Q |
1 |
ctttctctaactcttcagaacaatcgttggtgtaaacacgctctaaaatcatgttgggttttgaagaaaaacagtgtttttgatgattgttgtgaaaacg |
100 |
Q |
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| T |
43426417 |
ctttctctaactcttcagaccaatcattggtgtaaacacgctctaaaattgagttgggttttgaagaaaaatagtgttttttatgactgttgtgaaaagg |
43426318 |
T |
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| Q |
101 |
gaatagatcgtgtgaatgattcaaaagagggattgaaaatgtgaaagaagagaagtgagtaacctggt |
168 |
Q |
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| T |
43426317 |
taataaattgtgtgaacgattcaacataggaagtgaaaaggaggaagaagaaaaatgagaaacctggt |
43426250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 43426209 - 43426145
Alignment:
| Q |
188 |
tgatgatttgaggaatctgagggaagtagttattgctttcacgcgattcatcgttaaagcttgga |
252 |
Q |
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| T |
43426209 |
tgatgatttgaggaatttgagggaagtggttattgctttcatgcgattcatcgtaaaagtttgga |
43426145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 43434723 - 43434665
Alignment:
| Q |
188 |
tgatgatttgaggaatctgagggaagtagttattgctttcacgcgattcatcgttaaag |
246 |
Q |
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| T |
43434723 |
tgatgatttgaggtatctgagggacgaggttattgctttcatgcgattcatcgtaaaag |
43434665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 20400 - 20251
Alignment:
| Q |
21 |
caatcgttggtgtaaacacgctctaaaatcatgttgggttttgaagaaaaacagtgtttttgatgattgttgtgaaaacggaatagatcgtgtgaatgat |
120 |
Q |
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| T |
20400 |
caatcattggtaaaaacacgctctaaaatcatgttgggttttgaagaaaaatagtgtttttgatgattgttgtgaaaacataacaaatctttggatcgat |
20301 |
T |
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| Q |
121 |
tcaaaagagggattgaaaatgtgaaagaagagaagtgagtaacctggttc |
170 |
Q |
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| T |
20300 |
tccaaagagggagtgaaaaagaggaagaagaaaagtgagaaacctggttc |
20251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 41930469 - 41930402
Alignment:
| Q |
1 |
ctttctctaactcttcagaacaatcgttggtgtaaacacgctctaaaatcatgttgggttttgaagaa |
68 |
Q |
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| T |
41930469 |
ctttctctaactcttcagaccaatcgttggtgtaaacacgctctaaaatcatgttgggttttgaagaa |
41930402 |
T |
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