View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_low_75 (Length: 281)
Name: NF0953_low_75
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_75 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 7e-95; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 43440765 - 43441025
Alignment:
| Q |
1 |
gattgttctgaagagttagagaaagagttggaagcatgtcgtgaatcattgacccatgaaactgttgtttatgttttaaagcgattggataaaaacccaa |
100 |
Q |
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| T |
43440765 |
gattggtctgaagagttagagaaagagttggaagcatgtcgtgaatcattgacccatgaaactgttgtttatgttttaaatcgattggataaaaacccaa |
43440864 |
T |
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| Q |
101 |
ttaaagtttttacctttttcaattgggttagtgagaaagattggtttatgttaagttcttcggttta--------------------tagttagtaacaa |
180 |
Q |
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| T |
43440865 |
ttaaagtttttacctttttcaattgggttagtgagaaagattggtttatgtaaagttcttcggtttatagcttagttcttacggttttagctagtaacaa |
43440964 |
T |
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| Q |
181 |
gacgatgaaagagttttggattgttcttaaggctatgatggataaagggttctatttagat |
241 |
Q |
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| T |
43440965 |
gaagatgaaagagttttggattgttcttaaggctatgatggataaagggttctatttagat |
43441025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 43434898 - 43435166
Alignment:
| Q |
1 |
gattgttctgaagagttagagaaagagttggaagcatgtcgtgaatcattgacccatgaaactgttgtttatgttttaaagcgattggataaaaacccaa |
100 |
Q |
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| T |
43434898 |
gattggtctgaagagttagagaaagagttggaagcatgtcgtgaatcattgactcatgaaactgttgtttatgttttgaagcgattggataaaaacccaa |
43434997 |
T |
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| Q |
101 |
ttaaagtttttacctttttcaattgggttagtgagaaagattggtttatgttaagttcttcggttta--------------------tagttagtaacaa |
180 |
Q |
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| T |
43434998 |
ttaaagtttttacctttttcaattgggtcagtgagaaagagtggtttatggcaagttcttcggtttatagcttggttcttagggttttagctagtaataa |
43435097 |
T |
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| Q |
181 |
gacgatgaaagagttttggattgttcttaaggctatgatggataaagggttctatttagatgaagagac |
249 |
Q |
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| T |
43435098 |
ggagatgaaagagttttggattgttcttagggctatgaaggaaaaagggttttatttagatgaagagac |
43435166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 43426393 - 43426665
Alignment:
| Q |
1 |
gattgttctgaagagttagagaaagagttggaagcatgtcgtgaatcattgacccatgaaactgttgtttatgttttaaagcgattggataaaaacccaa |
100 |
Q |
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| T |
43426393 |
gattggtctgaagagttagagaaagaatttgaagaatgtcgtgaatcattgacccatgaaactgttgtttatgttttgaagcgattggataataaccctc |
43426492 |
T |
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| Q |
101 |
ttaaagtttttacctttttcaattgggttagtgagaaagattggtttatgttaagttcttcggtttata--------------------gttagtaacaa |
180 |
Q |
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| T |
43426493 |
ttaaagttttcacctttttcaattgggtcagtgagaaagagtggtttatggctagttcttcggcttatagcttggttctcaggattttagctaggaataa |
43426592 |
T |
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| Q |
181 |
gacgatgaaagagttttggattgttcttaaggctatgatggataaagggttctatttagatgaagagacacat |
253 |
Q |
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| T |
43426593 |
gaatatgaaagagttttggattgttcttaaggctatgaaggaaaatgggttttatttagatgaagagacacat |
43426665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 161
Target Start/End: Original strand, 43421863 - 43421975
Alignment:
| Q |
49 |
ttgacccatgaaactgttgtttatgttttaaagcgattggataaaaacccaattaaagtttttacctttttcaattgggttagtgagaaagattggttta |
148 |
Q |
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| T |
43421863 |
ttgacccatgaaaccgttgtttacattttgaaacaattggataatgacccattaaaagcttcttgctttttcaattgggtcagtaagaaaaattggtttt |
43421962 |
T |
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| Q |
149 |
tgttaagttcttc |
161 |
Q |
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| T |
43421963 |
tgccaagttcttc |
43421975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 26 - 254
Target Start/End: Original strand, 20407 - 20654
Alignment:
| Q |
26 |
agttggaagcatgtcgtgaatcattgacccatgaaactgttgtttatgttttaaagcgattggataaaaacccaattaaagtttttacctttttcaattg |
125 |
Q |
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| T |
20407 |
agttggaagcatgtcgtgaatcattgacccatgaaactcttgtttatgttttgaagcgattggataaaaacccacttaaagtttttacctttttcaactg |
20506 |
T |
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| Q |
126 |
ggttagtgagaaagattggtttatgttaagttcttcggtttatagt-------------------tagtaacaagacgatgaaagagttttggattgttc |
206 |
Q |
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| T |
20507 |
ggtcagtgagaaagagtggtttatggctagttcttcggtttatagttggttcttagggttctagctagtaataagagtatgaaagagttttggattgttc |
20606 |
T |
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| Q |
207 |
ttaaggctatgatggataaagggttctatttagatgaagagacacatg |
254 |
Q |
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| T |
20607 |
ttagggctatgaaagaaaaagggttctatttagatgaagagacacatg |
20654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 41930445 - 41930612
Alignment:
| Q |
1 |
gattgttctgaagagttagagaaagagttggaagcatgtcgtgaatcattgacccatgaaac--------tgttgtttatgttttaaagcgattggataa |
92 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
41930445 |
gattggtctgaagagttagagaaagagttggaagcatgtcgtgaatcattgacccatgaaactggcaaactgttgtttatgttttaaagtgattggataa |
41930544 |
T |
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| Q |
93 |
aaacccaattaaagtttttacctttttcaattgggttagtgagaaagattggtttatgttaagttctt |
160 |
Q |
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| T |
41930545 |
aaacctaattaaagtttttacctttatcaattgggttagtgataaagattggtttatgttaagttctt |
41930612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 40186860 - 40186762
Alignment:
| Q |
52 |
acccatgaaactgttgtttatg-ttttaaagcgattggataaaaacccaattaaagtttttacctttttcaattgggttagtgagaaagattggtttat |
149 |
Q |
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| T |
40186860 |
acccatgaaactgttgtttacgtttttgaagcgattggatcataaaccacataaagttttttcttttttcaactgggtcactcagaaacaatggtttat |
40186762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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