View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0953_low_76 (Length: 280)
Name: NF0953_low_76
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_76 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 40 - 280
Target Start/End: Original strand, 9221996 - 9222235
Alignment:
| Q |
40 |
cagagacaagaacttgacaagataagttagtttaatattcaaaacttgaaataatccgaataattatttggtcnnnnnnnnnnnnnnnnttctcctattc |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9221996 |
cagagacaagaacttgacaagataagttagtttaatattcaaaacttgaaataatccgaataattatttggtcaaaaaaatccaaaaaattctcctattc |
9222095 |
T |
|
| Q |
140 |
aagaaagacgatcacaccaatcccatacaagtacaattattgcaagcagacaaacccaaaaccacaccatcgcgaccatggtttccttaaccaataacca |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9222096 |
aagaaagacgatcacaccaatcccatacaagtacaattattgcaagcagacaaacacaaa-ccacactatcgcgaccatggtttccttaaccaataacca |
9222194 |
T |
|
| Q |
240 |
taattaaaatcaaaacaaacacgattaactaacgcgtaaac |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9222195 |
taattaaaatcaaaacaaacacgattaactaacgcgtaaac |
9222235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University