View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_low_80 (Length: 274)
Name: NF0953_low_80
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_80 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 6236339 - 6236083
Alignment:
| Q |
1 |
tgccttgaccggtgaacaaacatcatgtcaaagaactagtactactactatatgcagtgagccctgtagatatggatgtgtttaccttttgtgttatttc |
100 |
Q |
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| T |
6236339 |
tgccttgaccagtgaacaaacatcatgtcaaagaactagtactactactatatgcagtgagccctgtagatatggatgtgtttaccttttgtgttatttc |
6236240 |
T |
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| Q |
101 |
ttcttcatttcgttcttataaatcaaaaaacatagtgacattgattaggaaaataatctacgtagacacaaacacccattctacacccaagatataaata |
200 |
Q |
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| T |
6236239 |
ttgttcatttcgttcttataaatcaaaaaacatagtgacattgattaggaaaataatctacgtagacacaaacacccattctacacccaagatataaaaa |
6236140 |
T |
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| Q |
201 |
aa----tnnnnnnnntagagaaagtgatatgataattgtgatacattgatgatgatg |
253 |
Q |
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| T |
6236139 |
aaaattaaaaaaaaatagagaaagtgatatgataattgtgatacattgatgatgatg |
6236083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 6240435 - 6240344
Alignment:
| Q |
68 |
agatatggatgtgtttaccttttgtgttatttcttcttcatttcgttct-tataaatcaaaaaacatagtgacattgattaggaaaataatc |
158 |
Q |
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| T |
6240435 |
agatatggatgtgtttaccttttgtgttatttcatgttcatttgtttgtatataaatcaaaaaacatagtgatgttgattaggaaaataatc |
6240344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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