View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0953_low_83 (Length: 268)

Name: NF0953_low_83
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0953_low_83
NF0953_low_83
[»] chr6 (8 HSPs)
chr6 (47-258)||(21971621-21971832)
chr6 (55-231)||(20205087-20205263)
chr6 (55-231)||(22099110-22099286)
chr6 (57-218)||(20237693-20237854)
chr6 (57-218)||(22131677-22131838)
chr6 (58-218)||(24385435-24385595)
chr6 (56-211)||(20085787-20085942)
chr6 (58-218)||(22205223-22205383)
[»] scaffold0074 (1 HSPs)
scaffold0074 (56-218)||(48047-48209)
[»] scaffold0007 (1 HSPs)
scaffold0007 (56-218)||(5574-5736)
[»] scaffold0264 (1 HSPs)
scaffold0264 (58-218)||(15730-15890)


Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 47 - 258
Target Start/End: Complemental strand, 21971832 - 21971621
Alignment:
Q  47 tttattggcttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttccgcctcgcctttgtgttcaatgtgtcaaaaatgcaacgga 146  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21971832 tttattggcttaaagtggaagaaattgcgtatggtctcttcatgtgtcgaggtgatcttccgcctcgcctttgtgttcaatgcgtcaaaaatgcaacgga 21971733  T
Q  147 acaactatactcaaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattcgaataggtatttcattcatagcattgaa 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  21971732 acaactatactcaaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattcgaataggtatttcattcacagcattgaa 21971633  T
Q  247 acagggcctatg 258  Q
    ||||||||||||    
T  21971632 acagggcctatg 21971621  T

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Target: chr6; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 55 - 231
Target Start/End: Complemental strand, 20205263 - 20205087
Alignment:
Q  55 cttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttccgcctcgcctttgtgttcaatgtgtcaaaaatgcaacggaacaactat 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  || | || ||||||||||| |||||||| ||||||||| ||||||    
T  20205263 cttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttccttctagactctgtgttcaatgcgtcaaaaacgcaacggaagaactat 20205164  T
Q  155 actcaaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattcgaataggtatttc 231  Q
    ||||||||||||| | || |||| |||||||||||||||||||||||||| | ||||||||||| |||  |||||||    
T  20205163 actcaaagtgtcaatactccccacagggtataatttggtacagccattgcttacttcgctattcaaatcagtatttc 20205087  T

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Target: chr6; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 55 - 231
Target Start/End: Complemental strand, 22099286 - 22099110
Alignment:
Q  55 cttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttccgcctcgcctttgtgttcaatgtgtcaaaaatgcaacggaacaactat 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  || | || ||||||||||| |||||||| ||||||||| ||||||    
T  22099286 cttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttccttctagactctgtgttcaatgcgtcaaaaacgcaacggaagaactat 22099187  T
Q  155 actcaaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattcgaataggtatttc 231  Q
    ||||||||||||| | || |||| |||||||||||||||||||||||||| | ||||||||||| |||  |||||||    
T  22099186 actcaaagtgtcaatactccccacagggtataatttggtacagccattgcttacttcgctattcaaatcagtatttc 22099110  T

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Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 218
Target Start/End: Complemental strand, 20237854 - 20237693
Alignment:
Q  57 taaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttccgcctcgcctttgtgttcaatgtgtcaaaaatgcaacggaacaactatac 156  Q
    ||||||||||||||  ||||| || |||||| ||||||||||||| |||||   |||||| |||| ||||||||| ||||||||  |||||||| |||||    
T  20237854 taaagtggaagaaaaggtgtacggcctcttcttgtgtcgaggtgaccttcctaatcgcctctgtggtcaatgtgtaaaaaatgctgcggaacaaatatac 20237755  T
Q  157 tcaaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattc 218  Q
    |||||||||| ||| | |||| |||||||||||||||||||||| ||| |||||||||||||    
T  20237754 tcaaagtgtctttcttgcccaaagggtataatttggtacagccactgcttgcttcgctattc 20237693  T

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Target: chr6; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 218
Target Start/End: Complemental strand, 22131838 - 22131677
Alignment:
Q  57 taaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttccgcctcgcctttgtgttcaatgtgtcaaaaatgcaacggaacaactatac 156  Q
    ||||||||||||||  ||||| || |||||| ||||||||||||| |||||   |||||| |||| ||||||||| ||||||||  |||||||| |||||    
T  22131838 taaagtggaagaaaaggtgtacggcctcttcttgtgtcgaggtgaccttcctaatcgcctctgtggtcaatgtgtaaaaaatgctgcggaacaaatatac 22131739  T
Q  157 tcaaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattc 218  Q
    |||||||||| ||| | |||| |||||||||||||||||||||| ||| |||||||||||||    
T  22131738 tcaaagtgtctttcttgcccaaagggtataatttggtacagccactgcttgcttcgctattc 22131677  T

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Target: chr6; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 58 - 218
Target Start/End: Original strand, 24385435 - 24385595
Alignment:
Q  58 aaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttccgcctcgcctttgtgttcaatgtgtcaaaaatgcaacggaacaactatact 157  Q
    |||||||||||||| ||||| || |||||||||||||||||||| |||||   ||| || |||| ||||||||| ||||||||||| || ||| ||||||    
T  24385435 aaagtggaagaaatggtgtacggcctcttcatgtgtcgaggtgaccttcccgttcgtctctgtggtcaatgtgtaaaaaatgcaactgaccaaatatact 24385534  T
Q  158 caaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattc 218  Q
    ||||||||| ||| |  ||| |||||||| ||||||||||||| ||| |||||| ||||||    
T  24385535 caaagtgtcgttcatctccaaagggtatagtttggtacagccactgcttgcttcactattc 24385595  T

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Target: chr6; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 211
Target Start/End: Complemental strand, 20085942 - 20085787
Alignment:
Q  56 ttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttccgcctcgcctttgtgttcaatgtgtcaaaaatgcaacggaacaactata 155  Q
    |||||||||| ||||| ||||| || |||||| ||||||||||||| |||||   |||||| |||| ||||||||| ||||||||||| || ||| ||||    
T  20085942 ttaaagtggatgaaatggtgtacggcctcttcttgtgtcgaggtgaccttcctgttcgcctctgtggtcaatgtgtaaaaaatgcaactgaccaaatata 20085843  T
Q  156 ctcaaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttc 211  Q
    ||||||||||| ||| |  ||| |||||||||||||||||||||| ||| ||||||    
T  20085842 ctcaaagtgtctttcatctccaaagggtataatttggtacagccactgcttgcttc 20085787  T

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Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 58 - 218
Target Start/End: Original strand, 22205223 - 22205383
Alignment:
Q  58 aaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttccgcctcgcctttgtgttcaatgtgtcaaaaatgcaacggaacaactatact 157  Q
    |||||||||||||| ||||| || |||||||||||||||||||| |||||   || ||| || | ||||||||| |||||||||||||| ||| ||||||    
T  22205223 aaagtggaagaaatggtgtacggcctcttcatgtgtcgaggtgaccttcccgttcacctctgcggtcaatgtgttaaaaatgcaacggatcaaatatact 22205322  T
Q  158 caaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattc 218  Q
    ||||||||| ||| |  ||  |||| ||||||||||||||||| ||| || ||||||||||    
T  22205323 caaagtgtctttcatgtcctaagggcataatttggtacagccactgcttggttcgctattc 22205383  T

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Target: scaffold0074 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 56 - 218
Target Start/End: Original strand, 48047 - 48209
Alignment:
Q  56 ttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttccgcctcgcctttgtgttcaatgtgtcaaaaatgcaacggaacaactata 155  Q
    ||||||||||||||||  ||||||| |||||||||||||||||||| |||||   |||||| |||| ||||||||| ||||| |||||||| ||| ||||    
T  48047 ttaaagtggaagaaatgctgtatggcctcttcatgtgtcgaggtgaccttcccgttcgcctctgtggtcaatgtgtgaaaaaagcaacggaccaaatata 48146  T
Q  156 ctcaaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattc 218  Q
    ||||||||||| ||| |  ||| |||||||||||||||||||||| ||| || ||||||||||    
T  48147 ctcaaagtgtctttcatctccaaagggtataatttggtacagccactgcttggttcgctattc 48209  T

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Target: scaffold0007 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 218
Target Start/End: Original strand, 5574 - 5736
Alignment:
Q  56 ttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttccgcctcgcctttgtgttcaatgtgtcaaaaatgcaacggaacaactata 155  Q
    |||||||||||||||   ||||||| |||||||||||||||||||| |||||   || ||| |||| || |||||| |||||||||||||| ||| ||||    
T  5574 ttaaagtggaagaaacgctgtatggcctcttcatgtgtcgaggtgaccttcccgttcacctctgtgctcgatgtgtgaaaaatgcaacggatcaaatata 5673  T
Q  156 ctcaaagtgtcattc-cttcccagagggtataatttggtacagccattgcctgcttcgctattc 218  Q
    ||||||||||| ||| | ||||| |||||||||||||||||||||| ||| || ||||||||||    
T  5674 ctcaaagtgtctttcacgtccca-agggtataatttggtacagccactgcttggttcgctattc 5736  T

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Target: scaffold0264 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 218
Target Start/End: Complemental strand, 15890 - 15730
Alignment:
Q  58 aaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttccgcctcgcctttgtgttcaatgtgtcaaaaatgcaacggaacaactatact 157  Q
    |||||||||||||| ||||| || |||||||||||||||||||| |||||   || ||| || | ||||||||| |||||||||||||| ||| ||||||    
T  15890 aaagtggaagaaatggtgtacggcctcttcatgtgtcgaggtgaccttcccgttcacctctgcggtcaatgtgttaaaaatgcaacggatcaaatatact 15791  T
Q  158 caaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattc 218  Q
    ||||||||| ||  |  ||  |||| ||||||||||||||||| ||| || ||||||||||    
T  15790 caaagtgtctttgatgtcctaagggcataatttggtacagccactgcttggttcgctattc 15730  T

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