View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_low_84 (Length: 266)
Name: NF0953_low_84
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_84 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 52 - 266
Target Start/End: Complemental strand, 47285062 - 47284845
Alignment:
| Q |
52 |
aaaacatattctacatatcaaaagataaatatctcctaagctatgaaacaccgacttagacacgacactatgtaaacatttgtgaaaat---ttaattca |
148 |
Q |
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| T |
47285062 |
aaaacatattctacatgtcaaaagacaaatatctcctaagctatgaaacaccgacttagacacgacactatgtaaaaatttgtgaaaataaattaattca |
47284963 |
T |
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| Q |
149 |
atgtaattatatgtgttaatattgtgatggtgtcaatgctacaaagttgataagataaaagatgggttgaaaaatattggttaagaagatgaagcataaa |
248 |
Q |
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| T |
47284962 |
atgtaattatatgtgttaatattgtgatggcgtcaatgctacaaagttgataagataaaagatgggttgaaaaatatcggttaagaagatgaagcataaa |
47284863 |
T |
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| Q |
249 |
cttctttttgttgaagct |
266 |
Q |
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|||||||||||||||||| |
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| T |
47284862 |
cttctttttgttgaagct |
47284845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 47285103 - 47285059
Alignment:
| Q |
30 |
acacaaacacaccttttagtgtaaaacatattctacatatcaaaa |
74 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47285103 |
acacaaacacaccttttagtgtaaaacatattctacatatcaaaa |
47285059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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