View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_low_9 (Length: 519)
Name: NF0953_low_9
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 76 - 491
Target Start/End: Complemental strand, 49700651 - 49700236
Alignment:
| Q |
76 |
caacaatataaacatgtgaagaaagagtctgtctcannnnnnnnnnnnnnnngctctctagtgagacttattgattaccaaataccgaaagatgctcact |
175 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
49700651 |
caacaaaataaacatgtgaagaaagagtctgtctcatttttattttctttttgctctctagtgaaacttattgattaccaaataccgaaagatgctcact |
49700552 |
T |
|
| Q |
176 |
gatcacagacctaagttttatcacatacgatctcagtttttgtcaaatcaaatcaaaggataaccaaaaagaaaatattaccaattgaaaaattaggtct |
275 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49700551 |
gatcacagaccaaagttttatcacatacgatctcagtttttgtcaaatcaaatcaaaggataaccaaaaagaaaatattaccaattgaaaaattaggtct |
49700452 |
T |
|
| Q |
276 |
tttgacactcccttaaacaagtatacgttgtccatcattgaaaagaataagtagtatgagatactagatcgaatagcttttggaagggaatcaataatct |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
49700451 |
tttgacactcccttaaacaagtatacgttgtccatcattgaaaagaataagtagtatgagatactagattgaatagcttttggaagggaatcaataatct |
49700352 |
T |
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| Q |
376 |
cttgttgctgcactccttccaaatcggttcggtacttcatgaacaaatgagaaagcatctgttcttccaagtggataggtatcttattccggcgggcaaa |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49700351 |
cttgttgctgcactccttccaaatcggttcggtacttcatgaacaaatgagaaagcatctgttcttccaagtggataggtatcttattccggcgggcaaa |
49700252 |
T |
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| Q |
476 |
atttgcggcagcttgt |
491 |
Q |
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|||||||||||||||| |
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| T |
49700251 |
atttgcggcagcttgt |
49700236 |
T |
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