View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_low_90 (Length: 252)
Name: NF0953_low_90
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_90 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 9 - 187
Target Start/End: Complemental strand, 47284743 - 47284563
Alignment:
| Q |
9 |
gtgcatgtgcaccgtgcagagtttactttaatccttgaagagtttatgccgtgaaattttttctattttcaatttatctctttagtgtatactttcgtta |
108 |
Q |
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| T |
47284743 |
gtgcatgtgcaccgtgcatagtttactttaatccttgaagagtttatgccgtgaaattttttctattttcaatttatctctttactgtatactttcgtta |
47284644 |
T |
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| Q |
109 |
aattaaataggttgttaatttaa---tcttataaaattgtttttaaacgatcataattaatttcatagagacaattatttat |
187 |
Q |
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| T |
47284643 |
aatt-aataggttgttaatttaatattcttataaaattgtttttaaacgatcataattaatttcatagaaacaattatttat |
47284563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 47280139 - 47279965
Alignment:
| Q |
18 |
caccgtgcagagtttactttaatccttgaagagtttatgccgtgaaattttttc-tattttcaatttatctctttagtgtatactttc----------gt |
106 |
Q |
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| T |
47280139 |
caccgtgcagagttcactttaatccgtgaagagtttatgccgtgaaattttttcctattttcaatttatctattccatgcatactttcttttgggatcgt |
47280040 |
T |
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| Q |
107 |
taaattaaataggttgttaatttaatcttataaaattgtttttaaacgatcataattaatttcatagagacaatt |
181 |
Q |
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| T |
47280039 |
taaattaaataggttgttaatttaatctcataaaattgtttttaaacgatcataattaatttgatagagacaatt |
47279965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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