View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0953_low_93 (Length: 251)

Name: NF0953_low_93
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0953_low_93
NF0953_low_93
[»] chr5 (2 HSPs)
chr5 (3-222)||(12422786-12423005)
chr5 (1-144)||(2065256-2065399)
[»] chr3 (1 HSPs)
chr3 (1-222)||(30626814-30627036)
[»] chr1 (3 HSPs)
chr1 (1-222)||(38460179-38460404)
chr1 (83-222)||(38459752-38459891)
chr1 (1-85)||(38460748-38460832)
[»] chr4 (2 HSPs)
chr4 (1-222)||(8719195-8719420)
chr4 (143-201)||(11970231-11970289)
[»] chr7 (4 HSPs)
chr7 (80-224)||(34149710-34149854)
chr7 (80-224)||(34177270-34177414)
chr7 (143-195)||(2565157-2565209)
chr7 (143-195)||(47677222-47677274)
[»] chr8 (2 HSPs)
chr8 (143-195)||(31279317-31279369)
chr8 (161-195)||(37657388-37657422)
[»] chr2 (3 HSPs)
chr2 (143-195)||(44995958-44996010)
chr2 (143-195)||(45628091-45628143)
chr2 (143-195)||(9168879-9168931)


Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 12422786 - 12423005
Alignment:
Q  3 gtcgtgagatttggcaaagaaagtaacaannnnnnnccttctactagtgaattgggtgaaagcagcaatttatttttatcatagttccatttctccccat 102  Q
    ||||||||||||||||||||||| |||||       |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12422786 gtcgtgagatttggcaaagaaagcaacaatttttttccttctgctagtgaattgggtgaaagcagcaatttatttttatcatagttccatttctccccat 12422885  T
Q  103 tcttgttctcaatttcagttcccttctccaacagttctaattcaatttctaacaaccacccctcctctcaatttgtgtaattgcaaaatgaaataaagaa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12422886 tcttgttctcaatttcagttcccttctccaacagttctaattcaatttctaacaaccacccctcctctcaatttgtgtaattgcaaaatgaaataaagaa 12422985  T
Q  203 agaaaagataatcatgttga 222  Q
    |||||||| |||||||||||    
T  12422986 agaaaagagaatcatgttga 12423005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 2065399 - 2065256
Alignment:
Q  1 ctgtcgtgagatttggcaaagaaagtaacaannnnnnnccttctactagtgaattgggtgaaagcagcaatttatttttatcatagttccatttctcccc 100  Q
    ||||||||||||||||||||||||| ||||        |||||| || ||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  2065399 ctgtcgtgagatttggcaaagaaagcaacattttttttccttctgctggtgaattgggtgaaagcagcaatttttatttatcatagttccatttctcccc 2065300  T
Q  101 attcttgttctcaatttcagttcccttctccaacagttctaatt 144  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  2065299 attcttgttctcaatttcaattcccttctccaacagttctaatt 2065256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 30627036 - 30626814
Alignment:
Q  1 ctgtcgtgagatttggcaaagaaagtaacaannnnnnnccttctactagtgaattgggtgaaagcagcaatttattttt-atcatagttccatttctccc 99  Q
    ||||||||||||||||||||||||| |||||       |||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  30627036 ctgtcgtgagatttggcaaagaaagcaacaatttttttccttctgctagtgaattgggtgaaagcagcaatctattttttatcatagttccatttctccc 30626937  T
Q  100 cattcttgttctcaatttcagttcccttctccaacagttctaattcaatttctaacaaccacccctcctctcaatttgtgtaattgcaaaatgaaataaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30626936 cattcttgttctcaatttcagttcccttctccaacagttctaattcaatttctaacaaccacccctcctctcaatttgtgtaattgcaaaatgaaataaa 30626837  T
Q  200 gaaagaaaagataatcatgttga 222  Q
    ||||||||||| |||||||||||    
T  30626836 gaaagaaaagagaatcatgttga 30626814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38460179 - 38460404
Alignment:
Q  1 ctgtcgtgagatttggcaaagaaagtaacaannnnnnnccttctactagtgaattgggtgaaagcagcaatttatttttatcata----gttccatttct 96  Q
    ||||||||||||||||||||||||| |||||       |||||| ||||||||||||||||||||||||||||||||||||||||    |||||||||||    
T  38460179 ctgtcgtgagatttggcaaagaaagcaacaaattttttccttctgctagtgaattgggtgaaagcagcaatttatttttatcatatatagttccatttct 38460278  T
Q  97 ccccattcttgttctcaatttcagttcccttctccaacagttctaattcaatttctaacaaccacccctcctctcaatttgtgtaattgcaaaatgaaat 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38460279 ccccattcttgttctcaatttcagttcccttctccaacagttctaattcaatttctaacaaccacccctcctctcaatttgtgtaattgcaaaatgaaat 38460378  T
Q  197 aaagaaagaaaagataatcatgttga 222  Q
    |||||||||||||| |||||||||||    
T  38460379 aaagaaagaaaagagaatcatgttga 38460404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 83 - 222
Target Start/End: Complemental strand, 38459891 - 38459752
Alignment:
Q  83 atagttccatttctccccattcttgttctcaatttcagttcccttctccaacagttctaattcaatttctaacaaccacccctcctctcaatttgtgtaa 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38459891 atagttccatttctccccattcttgttctcaatttcagttcccttctccaacagttctaattcaatttctaacaaccacccctcctctcaatttgtgtaa 38459792  T
Q  183 ttgcaaaatgaaataaagaaagaaaagataatcatgttga 222  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  38459791 ttgcaaaatgaaataaagaaagaaaagagaatcgtgttga 38459752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 38460832 - 38460748
Alignment:
Q  1 ctgtcgtgagatttggcaaagaaagtaacaannnnnnnccttctactagtgaattgggtgaaagcagcaatttatttttatcata 85  Q
    ||||||||||||||||||||||||| |||||       |||||| ||||||||||||||||||||||||||||||||||||||||    
T  38460832 ctgtcgtgagatttggcaaagaaagcaacaaattttttccttctgctagtgaattgggtgaaagcagcaatttatttttatcata 38460748  T

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Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 8719195 - 8719420
Alignment:
Q  1 ctgtcgtgagatttggcaaagaaagtaacaannnnnnnccttctactagtgaattgggtgaaagcagcaatttatttttatcata----gttccatttct 96  Q
    ||||||||||||||||||||||||| |||||       |||||| ||||||||||||||||||||||||||||||||||||||||    |||||||||||    
T  8719195 ctgtcgtgagatttggcaaagaaagcaacaatttttttccttctgctagtgaattgggtgaaagcagcaatttatttttatcatatatagttccatttct 8719294  T
Q  97 ccccattcttgttctcaatttcagttcccttctccaacagttctaattcaatttctaacaaccacccctcctctcaatttgtgtaattgcaaaatgaaat 196  Q
    ||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8719295 ccccattattgttctcaatttcagttcccttctccaacaattgtaattcaatttctaacaaccacccctcctctcaatttgtgtaattgcaaaatgaaat 8719394  T
Q  197 aaagaaagaaaagataatcatgttga 222  Q
    |||||||||||||| |||||||||||    
T  8719395 aaagaaagaaaagagaatcatgttga 8719420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 11970231 - 11970289
Alignment:
Q  143 ttcaatttctaacaaccacccctcctctcaatttgtgtaattgcaaaatgaaataaaga 201  Q
    ||||||||||||||||||||| |  |||||||||||| ||||| || |||||| |||||    
T  11970231 ttcaatttctaacaaccacccatattctcaatttgtgaaattgaaacatgaaagaaaga 11970289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 224
Target Start/End: Original strand, 34149710 - 34149854
Alignment:
Q  80 atcatagttccatttctccccattcttgttctcaatttcagttcccttctccaacagttctaa--ttcaatttct-aacaaccacccctcctctcaattt 176  Q
    ||||||| ||||||| |||| ||||| || |||||||||| ||||||||||| |  ||||| |  | |||||||| |||||||||||||| |||||||||    
T  34149710 atcatagatccatttttccc-attctcgtcctcaatttcaattcccttctcctat-gttctcaactccaatttcttaacaaccacccctcttctcaattt 34149807  T
Q  177 gtgtaattgcaaaatgaaataaagaaagaaaagataatcatgttgatg 224  Q
    ||||||||||||||||||| ||| ||  |||||| ||||||| |||||    
T  34149808 gtgtaattgcaaaatgaaagaaa-aagaaaaagagaatcatggtgatg 34149854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 224
Target Start/End: Complemental strand, 34177414 - 34177270
Alignment:
Q  80 atcatagttccatttctccccattcttgttctcaatttcagttcccttctccaacagttctaa--ttcaatttct-aacaaccacccctcctctcaattt 176  Q
    ||||||| ||||||| |||| ||||| || |||||||||| ||||||||||| |  ||||| |  | |||||||| |||||||||||||| |||||||||    
T  34177414 atcatagatccatttttccc-attctcgtcctcaatttcaattcccttctcctat-gttctcaactccaatttcttaacaaccacccctcttctcaattt 34177317  T
Q  177 gtgtaattgcaaaatgaaataaagaaagaaaagataatcatgttgatg 224  Q
    ||||||||||||||||||| ||| ||  |||||| ||||||| |||||    
T  34177316 gtgtaattgcaaaatgaaagaaa-aagaaaaagagaatcatggtgatg 34177270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 2565209 - 2565157
Alignment:
Q  143 ttcaatttctaacaaccacccctcctctcaatttgtgtaattgcaaaatgaaa 195  Q
    ||||||||||||||||  |||||| |||||||||| |||||||||||||||||    
T  2565209 ttcaatttctaacaacagcccctcttctcaatttgagtaattgcaaaatgaaa 2565157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 47677274 - 47677222
Alignment:
Q  143 ttcaatttctaacaaccacccctcctctcaatttgtgtaattgcaaaatgaaa 195  Q
    |||||||||||||||| ||||||| |||||||||||| |  ||||||||||||    
T  47677274 ttcaatttctaacaacaacccctcttctcaatttgtgaagatgcaaaatgaaa 47677222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 31279369 - 31279317
Alignment:
Q  143 ttcaatttctaacaaccacccctcctctcaatttgtgtaattgcaaaatgaaa 195  Q
    |||||||||||||||| | ||||| |||||||||| |||||||||||||||||    
T  31279369 ttcaatttctaacaacaaaccctcttctcaatttgagtaattgcaaaatgaaa 31279317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 37657388 - 37657422
Alignment:
Q  161 cccctcctctcaatttgtgtaattgcaaaatgaaa 195  Q
    |||||| ||||||||||||||||||||||||||||    
T  37657388 cccctcttctcaatttgtgtaattgcaaaatgaaa 37657422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 44995958 - 44996010
Alignment:
Q  143 ttcaatttctaacaaccacccctcctctcaatttgtgtaattgcaaaatgaaa 195  Q
    |||||||||||||||| ||||||| |||||||||||| |  ||||||||||||    
T  44995958 ttcaatttctaacaacaacccctcttctcaatttgtgaagatgcaaaatgaaa 44996010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 45628091 - 45628143
Alignment:
Q  143 ttcaatttctaacaaccacccctcctctcaatttgtgtaattgcaaaatgaaa 195  Q
    |||||||||||||||| ||||||| |||||||||||| |  ||||||||||||    
T  45628091 ttcaatttctaacaacaacccctcttctcaatttgtgaagatgcaaaatgaaa 45628143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 9168931 - 9168879
Alignment:
Q  143 ttcaatttctaacaaccacccctcctctcaatttgtgtaattgcaaaatgaaa 195  Q
    |||||||||||||||| || |||| | ||||||| || |||||||||||||||    
T  9168931 ttcaatttctaacaacaactcctcttatcaatttttgaaattgcaaaatgaaa 9168879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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