View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_low_96 (Length: 251)
Name: NF0953_low_96
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_96 |
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Alignment Details
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 38976094 - 38975952
Alignment:
| Q |
1 |
acttactgacatatattcctactaaataattagaacaagtactggtactgctagtatacaccaaagttcaaaatattaagacttaacaaaacc-aannnn |
99 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
38976094 |
acttactgatatatattcctactaaataattagaacaagtactggtactgctagtatacaccaaagtccaaaatattaagacttaacaaaaccaaatttt |
38975995 |
T |
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| Q |
100 |
nnnngttcatgtcaattctttcacgtgacagaatttctctttg |
142 |
Q |
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| T |
38975994 |
ttttgttcatgtcaattctttcacgtgacagaatttctctttg |
38975952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 4565174 - 4565307
Alignment:
| Q |
8 |
gacatatattcctactaaataattagaacaagtactggtactgctagtatacaccaaagttcaaaatattaagacttaacaaaaccaannnnnnnngttc |
107 |
Q |
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||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||| |
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| T |
4565174 |
gacatatattcctaccaaataattagaacaagcactagtactgctagtatacaccaaagtccaaaatattaagatttaacaaaaccaaatttttttgttc |
4565273 |
T |
|
| Q |
108 |
atgtcaattctttcacgtgacagaatttctcttt |
141 |
Q |
| |
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| T |
4565274 |
atgtcaattctttcacgtgacagaatttttcttt |
4565307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 2621304 - 2621170
Alignment:
| Q |
8 |
gacatatattcctactaaataattagaacaagtactggtactgctagtatacaccaaagttcaaaatattaagacttaacaaaaccaannnnnnnngttc |
107 |
Q |
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| T |
2621304 |
gacatatattcctaccaaataattagaacaggtactggtactgctagtatacaccaaagtccaaaatattaagacttaacaaaaacaattttttttgttc |
2621205 |
T |
|
| Q |
108 |
atgtcaattctttcacgtgacagaatttctctttg |
142 |
Q |
| |
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|||||||||||||||||||||| |||| |||||| |
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| T |
2621204 |
atgtcaattctttcacgtgacaagatttttctttg |
2621170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 33604804 - 33604944
Alignment:
| Q |
8 |
gacatatattcctactaaataattagaacaagta------ctggtactgctagtatacaccaaagttcaaaatattaagacttaacaaaaccaannnnnn |
101 |
Q |
| |
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||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
33604804 |
gacatatattcctaccaaataattagaacaagtactagtactggtactgctagtatacaccaaattccaaaatattaagacttaacaaaaccaaattttt |
33604903 |
T |
|
| Q |
102 |
nngttcatgtcaattctttcacgtgacagaatttctctttg |
142 |
Q |
| |
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|||||||||||||||||| ||||||||||||| |||||| |
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| T |
33604904 |
ttgttcatgtcaattctttcccgtgacagaatttttctttg |
33604944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 37415296 - 37415410
Alignment:
| Q |
8 |
gacatatattcctactaaataattagaacaagtactggtactgctagtatacaccaaagttcaaaatattaagacttaacaaaaccaannnnnnnngttc |
107 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
37415296 |
gacatatattcctaccaaataattaggacaagtactggtactgctagtatacaccaaagtccaaaatattaagacttaacaaaaccaattttttttgttc |
37415395 |
T |
|
| Q |
108 |
atgtcaattctttca |
122 |
Q |
| |
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||||||||||||||| |
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|
| T |
37415396 |
atgtcaattctttca |
37415410 |
T |
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