View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0954_high_12 (Length: 291)

Name: NF0954_high_12
Description: NF0954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0954_high_12
NF0954_high_12
[»] chr8 (2 HSPs)
chr8 (20-272)||(11763909-11764161)
chr8 (20-79)||(11770165-11770224)
[»] chr1 (4 HSPs)
chr1 (173-209)||(781185-781221)
chr1 (115-153)||(5150961-5150999)
chr1 (66-100)||(30598203-30598237)
chr1 (132-208)||(44422668-44422744)
[»] chr3 (1 HSPs)
chr3 (176-217)||(28306118-28306159)
[»] chr2 (2 HSPs)
chr2 (56-97)||(43529774-43529815)
chr2 (172-208)||(37053563-37053599)
[»] chr6 (1 HSPs)
chr6 (172-208)||(10154190-10154226)
[»] chr4 (1 HSPs)
chr4 (54-94)||(35516978-35517018)


Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 272
Target Start/End: Original strand, 11763909 - 11764161
Alignment:
Q  20 gacgtgtcattccagatttcataggtaagattatgtgtctgtttaaattgacttatttgaactaatctattggtataaataacttatgacatgctcataa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11763909 gacgtgtcattccagatttcataggtaagattatgtgtctgtttaaattgacttatttgaactaatctattggtataaataacttatgacatgctcataa 11764008  T
Q  120 gttatttttcaacttatttttataagctcttcataatacggtatagaaataccttataacttatatgaaaacagtttcagtttattttactatttgttga 219  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11764009 gttatttttcaacttatttttataagcacttcataatacggtatggaaataccttataacttatatgaaaacagtttcagtttattttactatttgttga 11764108  T
Q  220 ttgattactttaatgcttttcaacttaactatatataccaattaacaatctga 272  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11764109 ttgattacttgaatgcttttcaacttaactatatataccaattaacaatctga 11764161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 11770165 - 11770224
Alignment:
Q  20 gacgtgtcattccagatttcataggtaagattatgtgtctgtttaaattgacttatttga 79  Q
    |||||||||||||||||||||||||||||| ||||||| | |||  | ||||||||||||    
T  11770165 gacgtgtcattccagatttcataggtaagaatatgtgtatctttggactgacttatttga 11770224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 781185 - 781221
Alignment:
Q  173 ttataacttatatgaaaacagtttcagtttattttac 209  Q
    |||||||||||||||||||||||||| ||||||||||    
T  781185 ttataacttatatgaaaacagtttcactttattttac 781221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 5150999 - 5150961
Alignment:
Q  115 cataagttatttttcaacttatttttataagctcttcat 153  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  5150999 cataagttttttttcaacttatttctataagctcttcat 5150961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 100
Target Start/End: Original strand, 30598203 - 30598237
Alignment:
Q  66 attgacttatttgaactaatctattggtataaata 100  Q
    ||||||||||||||||| |||||||||||||||||    
T  30598203 attgacttatttgaacttatctattggtataaata 30598237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 44422744 - 44422668
Alignment:
Q  132 cttatttttataagctcttcataatacggtatagaaataccttataacttatatgaaaacagtttcagtttatttta 208  Q
    |||||||| ||||||||| ||  |||   |||| ||||| |||||| |||||||||||||||||| || ||||||||    
T  44422744 cttattttcataagctctccaggatagcttataaaaatagcttatagcttatatgaaaacagtttgagattatttta 44422668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 28306159 - 28306118
Alignment:
Q  176 taacttatatgaaaacagtttcagtttattttactatttgtt 217  Q
    ||||||||||||||||||||| | ||||||||||| ||||||    
T  28306159 taacttatatgaaaacagtttgactttattttactttttgtt 28306118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 43529774 - 43529815
Alignment:
Q  56 gtctgtttaaattgacttatttgaactaatctattggtataa 97  Q
    |||||||| ||||||||||||||| || ||||||||||||||    
T  43529774 gtctgtttgaattgacttatttgagcttatctattggtataa 43529815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 37053599 - 37053563
Alignment:
Q  172 cttataacttatatgaaaacagtttcagtttatttta 208  Q
    ||||||||||||||||||||||||| | |||||||||    
T  37053599 cttataacttatatgaaaacagtttgactttatttta 37053563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 10154226 - 10154190
Alignment:
Q  172 cttataacttatatgaaaacagtttcagtttatttta 208  Q
    ||||||||||||||||||||||||| | |||||||||    
T  10154226 cttataacttatatgaaaacagtttgactttatttta 10154190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 35516978 - 35517018
Alignment:
Q  54 gtgtctgtttaaattgacttatttgaactaatctattggta 94  Q
    |||| |||||| |||||||||||||| ||||||||||||||    
T  35516978 gtgtatgtttagattgacttatttgagctaatctattggta 35517018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University