View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0954_high_13 (Length: 214)
Name: NF0954_high_13
Description: NF0954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0954_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 11764068 - 11764278
Alignment:
| Q |
1 |
cttatatgaaaacagtttcagtttattttactatttgttgattgattactttaatgcttttcaacttaactatatataccaattaacaatctgatcatga |
100 |
Q |
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| T |
11764068 |
cttatatgaaaacagtttcagtttattttactatttgttgattgattacttgaatgcttttcaacttaactatatataccaattaacaatctgatcatga |
11764167 |
T |
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| Q |
101 |
ttacattgatgcagctgagtatgctaagttgccgttaattcaatcatattttcctcgtgttcaagaatatgttaatggaatcaattttgcatcagcaaca |
200 |
Q |
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| T |
11764168 |
ttacattgatgcagctgagtatgctaagttgccattaattcaatcatattttcctcgtgttcaagaatatgttaatggaatcaattttgcatcagcagga |
11764267 |
T |
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| Q |
201 |
gctagggcttt |
211 |
Q |
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||| ||||||| |
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| T |
11764268 |
gctggggcttt |
11764278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 74 - 197
Target Start/End: Original strand, 11783584 - 11783710
Alignment:
| Q |
74 |
atataccaattaacaatctgatcatgattacattgatgcagctgagtatgctaagttgccgttaattcaatcatat---tttcctcgtgttcaagaatat |
170 |
Q |
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| T |
11783584 |
atataccaattaacaatctgatcatgattactttgttgcagctgagtatgctaagttaccgttaattcaaccatatctatttcctggttctcaactatat |
11783683 |
T |
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| Q |
171 |
gttaatggaatcaattttgcatcagca |
197 |
Q |
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| T |
11783684 |
attaatggagttaattttgcatcagca |
11783710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 110 - 211
Target Start/End: Original strand, 11778255 - 11778359
Alignment:
| Q |
110 |
tgcagctgagtatgctaagttgccgttaattcaatcatat---tttcctcgtgttcaagaatatgttaatggaatcaattttgcatcagcaacagctagg |
206 |
Q |
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||||||||||||||||||||||||||||| |||| |||| |||||| || |||||||||| |||||||||||||||||||||||||| ||||| || |
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| T |
11778255 |
tgcagctgagtatgctaagttgccgttaactcaaccatacctatttcctggttctcaagaatatattaatggaatcaattttgcatcagcagcagctggg |
11778354 |
T |
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| Q |
207 |
gcttt |
211 |
Q |
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||||| |
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| T |
11778355 |
gcttt |
11778359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 193
Target Start/End: Original strand, 11770331 - 11770417
Alignment:
| Q |
110 |
tgcagctgagtatgctaagttgccgttaattcaatcata---ttttcctcgtgttcaagaatatgttaatggaatcaattttgcatc |
193 |
Q |
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|||||||||||||||||||||||| ||||||||| |||| |||||| | |||| |||| |||||||||||||||||||||| |
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| T |
11770331 |
tgcagctgagtatgctaagttgccattaattcaaccatacctatttcctgattctcaacaatacattaatggaatcaattttgcatc |
11770417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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