View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0954_low_10 (Length: 500)
Name: NF0954_low_10
Description: NF0954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0954_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-153; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 179 - 491
Target Start/End: Complemental strand, 41788578 - 41788269
Alignment:
| Q |
179 |
actgtgggaaacaattgctggttctgtcaacaatgcagctgattttgcatacctgttcttttcaattttctgcaggttatccaaagatgcggtgacatat |
278 |
Q |
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| T |
41788578 |
actgtgggaaacaattgctggttctgtcaacaatgcagctgattttgcagacctgttcttttcaattttctgcaggttatccaaagatgcggtgacatat |
41788479 |
T |
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| Q |
279 |
atcatcatgatcatgtggtgtctatggcggagacgtaacgaaaaggtgtggcatgaagaggtgaaggagccacacatatccattcagctagtgcgggaca |
378 |
Q |
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| T |
41788478 |
atcatcatgatcatgtggtgtctatggcggagatgtaacgaaaaggtgtggcatgacgaggtgaaggagccacacatatccattcagctagcgcgggaca |
41788379 |
T |
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| Q |
379 |
cgttaagggaatggctatctgctgttcgagtcaacaaggcaactcctgctgtacagcagattgttacggatacgaattggaaaccaccagcaaagggtta |
478 |
Q |
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| T |
41788378 |
cgttaagggaatggctat---ctgttcgagtcaacaaggcaactcctgctgtacaacagattgttacggatacgaattggaaaccaccagcaaagggtta |
41788282 |
T |
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| Q |
479 |
tgtgaagtataat |
491 |
Q |
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| T |
41788281 |
tgtgaagtgtaat |
41788269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 181 - 358
Target Start/End: Original strand, 28480977 - 28481154
Alignment:
| Q |
181 |
tgtgggaaacaattgctggttctgtcaacaatgcagctgattttgcatacctgttcttttcaattttctgcaggttatccaaagatgcggtgacatatat |
280 |
Q |
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| T |
28480977 |
tgtggaaaacaattgctagttttgttaacaccgcagctgattttgcaaacctgttcttttcaaatttctgcaggttatccagagatgtggtgacaaatat |
28481076 |
T |
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| Q |
281 |
catcatgatcatgtggtgtctatggcggagacgtaacgaaaaggtgtggcatgaagaggtgaaggagccacacatatc |
358 |
Q |
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| T |
28481077 |
catcatgatcctgtaatgtctatggcggagacgtaacgaaaaggtgtggcatgacgaggcgaaggagccacatatatc |
28481154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 41788691 - 41788626
Alignment:
| Q |
117 |
attgtattttgaatagctataacgtgttatatat--ccaaagattaacattaattatgaatggcac |
180 |
Q |
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| T |
41788691 |
attgtattttgaatagctataacgtgttatatatatccaaagattaacattaattatgaatggcac |
41788626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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