View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0954_low_11 (Length: 488)

Name: NF0954_low_11
Description: NF0954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0954_low_11
NF0954_low_11
[»] chr2 (1 HSPs)
chr2 (81-488)||(11330243-11330638)
[»] scaffold0288 (1 HSPs)
scaffold0288 (386-488)||(9876-9979)
[»] chr1 (3 HSPs)
chr1 (386-488)||(5362810-5362908)
chr1 (423-484)||(35409005-35409066)
chr1 (386-484)||(52319058-52319157)
[»] chr5 (3 HSPs)
chr5 (422-488)||(41658759-41658825)
chr5 (385-488)||(37097888-37097987)
chr5 (404-477)||(38646660-38646732)
[»] scaffold0301 (1 HSPs)
scaffold0301 (386-475)||(5879-5967)
[»] chr8 (1 HSPs)
chr8 (394-446)||(35908605-35908657)
[»] chr4 (2 HSPs)
chr4 (394-446)||(33911970-33912022)
chr4 (423-483)||(33827450-33827509)


Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 81 - 488
Target Start/End: Original strand, 11330243 - 11330638
Alignment:
Q  81 ataattctgaggtacatactacattggaacaagaataagataatagtttgattaaattttcagttgctactgatcatcttattagatatagcgaatggaa 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11330243 ataattctgaggtacatactacattggaacaagaataagataatagtttgattaaattttcagttgctactgatcatcttattagatatagcaaatggaa 11330342  T
Q  181 taagtaacataacctttcagaaaagactaatattaacaatgtccaatactatgttgggcaggttagcctagatattaccctaagtagagtgcctacttag 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  11330343 taagtaacataacctttcagaaaagactaatattaacaatgtccaatactatgttgagcaggttagcctagatattaccctaagtagagtgcctacttag 11330442  T
Q  281 attatagcagtaaaattcatcaaactctaaagggaagtgaaattggacattcatgcagcaacttcaatcaataagtataacttttttctataggcaaatg 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11330443 attatagcagtaaaattcatcaaactctaaagggaagtgaaattggacattcatgcagcaacttcaatcaataagtataacttttttctataggcaaatg 11330542  T
Q  381 ttagttgttacttgttagtaaattgttagagggaagggggaaatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtccc 480  Q
    |||||||||||||||||||||||| |||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11330543 ttagttgttacttgttagtaaatttttagagggaaggggg------------ccggggatcgaactcggaacctccttcttaaatctccttcaacgtccc 11330630  T

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Target: scaffold0288 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 386 - 488
Target Start/End: Complemental strand, 9979 - 9876
Alignment:
Q  386 tgttacttgttagtaaattgtta-gagggaagggggaaatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttag 484  Q
    ||||| ||||||||||||||||| ||| | ||||||||||||||||||| |||  || ||| ||| ||||||||||||||||||||||||| ||||| ||    
T  9979 tgttagttgttagtaaattgttaagagaggagggggaaatgttagtttctgggagtcaaacccgggacctccttcttaaatctccttcaacatccctgag 9880  T
Q  485 ctca 488  Q
    ||||    
T  9879 ctca 9876  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 386 - 488
Target Start/End: Complemental strand, 5362908 - 5362810
Alignment:
Q  386 tgttacttgttagtaaattgttagagggaagggggaaatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttagc 485  Q
    ||||| |||||||||  ||||| ||||||||||| |||||||||||||| || || |||| ||| ||||||||||||||||||||||||| |||||||||    
T  5362908 tgttagttgttagta--ttgttggagggaagggg-aaatgttagtttccagg-attgaacacgggacctccttcttaaatctccttcaacctcccttagc 5362813  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 484
Target Start/End: Original strand, 35409005 - 35409066
Alignment:
Q  423 atgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttag 484  Q
    ||||||||||| || |||  ||||||||||||||| ||| || ||||||||||| |||||||    
T  35409005 atgttagtttctggagatgaaactcggaacctcctcctttaaactccttcaacgacccttag 35409066  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 484
Target Start/End: Complemental strand, 52319157 - 52319058
Alignment:
Q  386 tgttacttgttagtaaattgttagag-ggaagggggaaatgttagtttccggggatcgaactcgga-acctccttcttaaatctccttcaacgtccctta 483  Q
    ||||| ||||||| ||||||||| || || |||| |||||||||||||| | | |||||| || || ||||||  |||||||||||||||||| ||||||    
T  52319157 tgttagttgttagcaaattgttaaagtgggagggagaaatgttagtttctgagaatcgaa-tctgagacctccggcttaaatctccttcaacgcccctta 52319059  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 488
Target Start/End: Original strand, 41658759 - 41658825
Alignment:
Q  422 aatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttagctca 488  Q
    |||||||||||||||| ||| ||  ||| | |||||||||||| ||||||| |||||||||||||||    
T  41658759 aatgttagtttccgggaatcaaatccgggaactccttcttaaacctccttcgacgtcccttagctca 41658825  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 488
Target Start/End: Complemental strand, 37097987 - 37097888
Alignment:
Q  385 ttgttacttgttagtaaattgttagagggaagggggaaatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttag 484  Q
    |||||| ||||| |||||||| ||||  | || |||||||||||||| | | |||| |||| |||||||| |||   ||||||||||||| |||||||||    
T  37097987 ttgttagttgttcgtaaattggtagataggagagggaaatgttagtt-ctgaggatagaacccggaacctactt---aaatctccttcaatgtcccttag 37097892  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 477
Target Start/End: Complemental strand, 38646732 - 38646660
Alignment:
Q  404 tgttagagggaagggggaaatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgt 477  Q
    |||||||||  |||| ||||||||||||| || |||||||||||  ||| ||| || |||||||||||||||||    
T  38646732 tgttagaggagagggagaaatgttagttttcgaggatcgaactcaaaacatccatc-taaatctccttcaacgt 38646660  T

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Target: scaffold0301 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 475
Target Start/End: Complemental strand, 5967 - 5879
Alignment:
Q  386 tgttacttgttagtaaattgttagagggaagggggaaatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaac 475  Q
    ||||| |||||||||||||||| |||||||  | ||||| |||||||||| |||||||||    || ||||||||||||| |||||||||    
T  5967 tgttagttgttagtaaattgttggagggaatagagaaat-ttagtttccgtggatcgaaccgaaaatctccttcttaaatttccttcaac 5879  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 446
Target Start/End: Complemental strand, 35908657 - 35908605
Alignment:
Q  394 gttagtaaattgttagagggaagggggaaatgttagtttccggggatcgaact 446  Q
    ||||||| |||||||||||| ||||||||||||||||||| ||| ||| ||||    
T  35908657 gttagtacattgttagaggggagggggaaatgttagtttctgggaatccaact 35908605  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 446
Target Start/End: Complemental strand, 33912022 - 33911970
Alignment:
Q  394 gttagtaaattgttagagggaagggggaaatgttagtttccggggatcgaact 446  Q
    ||||||| |||||||||||| ||||||||||||||||||| ||| ||| ||||    
T  33912022 gttagtacattgttagaggggagggggaaatgttagtttctgggaatccaact 33911970  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 483
Target Start/End: Complemental strand, 33827509 - 33827450
Alignment:
Q  423 atgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtccctta 483  Q
    ||||||||||||||| ||||||| ||  ||||||| |||||| |||||||||||| |||||    
T  33827509 atgttagtttccggg-atcgaacccgagacctcctccttaaagctccttcaacgttcctta 33827450  T

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