View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0954_low_14 (Length: 487)
Name: NF0954_low_14
Description: NF0954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0954_low_14 |
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| [»] scaffold0651 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 55 - 487
Target Start/End: Complemental strand, 3704 - 3272
Alignment:
| Q |
55 |
gaaactattttgttcccaaagattattcatctctagaaggtccttcaatggaccaacaatatgaaaatggagggatcctagcttctattgattcaagaat |
154 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3704 |
gaaactattttgttcccaaagattattcatctctagaaggtccttcaatggaccaacaatatgaaaatggagggatcctagcttctattgattcaagaat |
3605 |
T |
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| Q |
155 |
acttattttggcaggttcaacagtaggtggtggttcagctgttaattggtcagcttgcattaaaacaccagaaaaggtgttgaaagaatggtcagagaaa |
254 |
Q |
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| T |
3604 |
acttattttggcaggttcaacagtaggtggtggttcagctgttaattggtcagcttgcattaaaacaccagaaaaggtgttgaaagaatggtcagagaaa |
3505 |
T |
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| Q |
255 |
cacaaactttcactctttgatagcatagagtatctatctgctatggaaactgtgtgcgagagaattggtgtcaacgaaaattgtacacaagaaggattcc |
354 |
Q |
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| T |
3504 |
cacaaactttcactctttgatagcatagagtatctatctgctatggaaactgtgtgcgagagaattggtgtcaacgaaaattgtacacaagaaggattcc |
3405 |
T |
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| Q |
355 |
aaaatcaagtattaagaaaagggtgtcaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatcattattgtggttcatgtggtta |
454 |
Q |
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| T |
3404 |
aaaatcaagtattaagaaaagggtgtcaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatcattattgtggttcatgtggtta |
3305 |
T |
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| Q |
455 |
tggttgtccaaagggagagaaacaagggactca |
487 |
Q |
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| T |
3304 |
tggttgtccaaagggagagaaacaagggactca |
3272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 55 - 487
Target Start/End: Original strand, 31332219 - 31332651
Alignment:
| Q |
55 |
gaaactattttgttcccaaagattattcatctctagaaggtccttcaatggaccaacaatatgaaaatggagggatcctagcttctattgattcaagaat |
154 |
Q |
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| T |
31332219 |
gaaactattttgttcccaaagattattcatctctagaaggtccttcaatggaccaacaatatgaaaatggagggatcctagcttctattgattcaagaat |
31332318 |
T |
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| Q |
155 |
acttattttggcaggttcaacagtaggtggtggttcagctgttaattggtcagcttgcattaaaacaccagaaaaggtgttgaaagaatggtcagagaaa |
254 |
Q |
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| T |
31332319 |
acttattttggcaggttcaacagtaggtggtggttcagctgttaattggtcagcttgcattaaaacaccagaaaaggtgttgaaagaatggtcagagaaa |
31332418 |
T |
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| Q |
255 |
cacaaactttcactctttgatagcatagagtatctatctgctatggaaactgtgtgcgagagaattggtgtcaacgaaaattgtacacaagaaggattcc |
354 |
Q |
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| T |
31332419 |
cacaaactttcactctttgatagcatagagtatctatctgctatggaaactgtgtgcgagagaattggtgtcaacgaaaattgtacacaagaaggattcc |
31332518 |
T |
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| Q |
355 |
aaaatcaagtattaagaaaagggtgtcaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatcattattgtggttcatgtggtta |
454 |
Q |
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| T |
31332519 |
aaaatcaagtattaagaaaagggtgtcaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatcattattgtggttcatgtggtta |
31332618 |
T |
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| Q |
455 |
tggttgtccaaagggagagaaacaagggactca |
487 |
Q |
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| T |
31332619 |
tggttgtccaaagggagagaaacaagggactca |
31332651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 55 - 487
Target Start/End: Original strand, 31319966 - 31320398
Alignment:
| Q |
55 |
gaaactattttgttcccaaagattattcatctctagaaggtccttcaatggaccaacaatatgaaaatggagggatcctagcttctattgattcaagaat |
154 |
Q |
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| T |
31319966 |
gaaactattttgttcccaaagattattcatctctagaaggtccttcaatggaccaacaatatgaaaaaggaggtatgttagcttctgttgattcaagaat |
31320065 |
T |
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| Q |
155 |
acttattttggcaggttcaacagtaggtggtggttcagctgttaattggtcagcttgcattaaaacaccagaaaaggtgttgaaagaatggtcagagaaa |
254 |
Q |
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| T |
31320066 |
agttctttttgcaggttcaacagtaggtggtggttcagctgtgaattggtcagcatgcataagaacaccacagaatgtgttaaaagaatggtcagatgaa |
31320165 |
T |
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| Q |
255 |
cacaaactttcactctttgatagcatagagtatctatctgctatggaaactgtgtgcgagagaattggtgtcaacgaaaattgtacacaagaaggattcc |
354 |
Q |
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| T |
31320166 |
cacaaacttcccctctttgaaaccttagagtatctatctgctatggaaaccgtgtgtgagaggattggtgtcaatgaaaattgtacacaagaaggattcc |
31320265 |
T |
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| Q |
355 |
aaaatcaagtattaagaaaagggtgtcaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatcattattgtggttcatgtggtta |
454 |
Q |
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| T |
31320266 |
aaaatcaagtattaagaaaagggtgccaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatcattattgtggttcatgtggtta |
31320365 |
T |
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| Q |
455 |
tggttgtccaaagggagagaaacaagggactca |
487 |
Q |
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| T |
31320366 |
tggttgtccaaagggagagaaacaagggactca |
31320398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 33522337 - 33522279
Alignment:
| Q |
165 |
gcaggttcaacagtaggtggtggttcagctgttaattggtcagcttgcattaaaacacc |
223 |
Q |
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| T |
33522337 |
gcaggttcaacaattggtggtggttctgctgttaattggtcagcatcgattaaaacacc |
33522279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 479
Target Start/End: Complemental strand, 33522105 - 33522023
Alignment:
| Q |
397 |
aagttgattatgtgccaagaaattcaccagggaatcattattgtggttcatgtggttatggttgtccaaagggagagaaacaa |
479 |
Q |
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|||| ||||||||||| ||||||||| ||| | ||||||| |||||||| ||| ||||||||| |||| ||||| |||||| |
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| T |
33522105 |
aagtcgattatgtgccgagaaattcatcagagcatcattactgtggttcttgtaactatggttgtacaaaaggagataaacaa |
33522023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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