View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0954_low_15 (Length: 462)
Name: NF0954_low_15
Description: NF0954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0954_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 89 - 433
Target Start/End: Original strand, 29603167 - 29603507
Alignment:
| Q |
89 |
tcataaataaaggagtctgggtttgaaccttagtccagcttagaatctaacactttcttcatttatcttatttgattgaatgtgtcggatatttttgcaa |
188 |
Q |
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| T |
29603167 |
tcataaatagagtagtctggatttgaaccttggtccagcgtacaacctaacactttcttcatttatcttatttgattgaatgtgtcggatatttttgcaa |
29603266 |
T |
|
| Q |
189 |
caaatctaaaatcttataagcatcttttgagattctttctttgaggtccaaagaacttttgcatttgacctgtatattgtactttgtgcaatttatagtg |
288 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
29603267 |
caaatctaaaatcttataagcatcttttgaaattctttctttgaggtccaaagaacttttgcattata-ttgtatattgtactttgtgcaatttatagtg |
29603365 |
T |
|
| Q |
289 |
ttaaagttatagtaatttagtatagcatcctcgtttcataccttttctaaacatcgaaaatgtcttaatgttgatttggaatctttccattcatgataac |
388 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29603366 |
ttaaagttatagtaatttagtatagcat-ctcgtttcataccttttctaaacatcgaaaatgtcttaatgttgatttggaatctttccattcatg--aac |
29603462 |
T |
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| Q |
389 |
atcaacttattattacttggacatcaaggttgttttcataggtcg |
433 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29603463 |
atcaacttattattacttggacatcaaggttgttttcataggtcg |
29603507 |
T |
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