View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0954_low_16 (Length: 455)
Name: NF0954_low_16
Description: NF0954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0954_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 79 - 344
Target Start/End: Original strand, 42453863 - 42454128
Alignment:
| Q |
79 |
tgataatagggattgtggctttggctgttcctttccgatatcttgtctttgtttggtttctttattttctaaggcatccaatgttccgttcaccttttcc |
178 |
Q |
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| T |
42453863 |
tgataatagggattgtggctttggctgttcctttccgatatcttgtctttgtttggtttctttattttctaaggcatccaatgttccgttcaccttttcc |
42453962 |
T |
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| Q |
179 |
tccattttatgaaaattggattcgaaggatgccttcaaaattagatagcatgatatgaaaatgcagctctatggttcttttttatcaggaaattaggaat |
278 |
Q |
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| T |
42453963 |
tccattttatgaaaattggattcgaaggatgccttcaaaattagatagcatgatatgaaaatgcagctctatggttcttttttatcaggaaattaggaat |
42454062 |
T |
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| Q |
279 |
aagccaacattgatgcagatgcaatttgcttagttattttgtttttaatgatgaatattttattta |
344 |
Q |
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| T |
42454063 |
aagccaacattgatgcagatgcaatttgcttagttattttgtttttaatgatgaatattttattta |
42454128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 384 - 447
Target Start/End: Original strand, 42454124 - 42454187
Alignment:
| Q |
384 |
atttattgatgtttttattggttgtgcaaatactctctgaaattaggtttttggaacctatgat |
447 |
Q |
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| T |
42454124 |
atttattgatgtttttattggttgtgcaaatactctctgaaattaggtttttggaacctgtgat |
42454187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 415
Target Start/End: Complemental strand, 47973351 - 47973248
Alignment:
| Q |
316 |
tttgtttttaatgatgaatattttat--ttaagtttatcatcacacttattaattcatattttggacttcatttattga--tgtttttattggttgtgca |
411 |
Q |
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| T |
47973351 |
tttgtttttagtgattaataatttatattttattttatcatctcacttataaattcatattttggtcttcatgtatttacgtttttttatttgttgtgca |
47973252 |
T |
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| Q |
412 |
aata |
415 |
Q |
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|||| |
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| T |
47973251 |
aata |
47973248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 47973419 - 47973357
Alignment:
| Q |
228 |
atgatatgaaaatgcagctctatggttcttttttatcaggaaattaggaataagccaacattgat |
292 |
Q |
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| T |
47973419 |
atgatatgaaagtgcaactttgtggttcttttt-attaggaa-ttaggaataagccaacattgat |
47973357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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