View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0954_low_17 (Length: 446)

Name: NF0954_low_17
Description: NF0954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0954_low_17
NF0954_low_17
[»] chr2 (1 HSPs)
chr2 (29-392)||(32852033-32852397)


Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 29 - 392
Target Start/End: Complemental strand, 32852397 - 32852033
Alignment:
Q  29 aagtttgacgcatgcttcaaattcaaaatcacccgagtaataacatactttgaacttgcagctgttgaaaaagaataatagcatagtgcagtgttacact 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32852397 aagtttgacgcatgcttcaaattcaaaatcacccgagtaataacatactttgaacttgcagctgttgaaaaagaataatagcatagtgcagtgttacact 32852298  T
Q  129 gtggttgtgctacatctagtcatggtctcaaatgtcgcattgcatctatgt-atatattgttaccaaattgtttaattcttaggtttatgccttcagtaa 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32852297 gtggttgtgctacatctagtcatggtctcaaatgtcgcattgcatctatgttatatattgttaccaaattgtttaattcttaggtttatgccttcagtaa 32852198  T
Q  228 atgatgtacctagggaagtgaagccaataactttatttgctcactattcaaacaggtatatttttactttgtgtcagctgacataaacattcctttgttt 327  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||    
T  32852197 atgatgtacctagggaagtgaagccaataactttatttgctcactattcaaacaggtatacttttacattgtgtcagctgacataaacattccttcgttt 32852098  T
Q  328 taaaattgttattgttatcgagatatcattttcattcttgtgtttagaccatgttttagttaatc 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32852097 taaaattgttattgttatcgagatatcattttcattcttgtgtttagaccatgttttagttaatc 32852033  T

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