View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0954_low_18 (Length: 399)
Name: NF0954_low_18
Description: NF0954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0954_low_18 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 22 - 399
Target Start/End: Complemental strand, 32852659 - 32852282
Alignment:
| Q |
22 |
catcatcagtgactaaaattaaaattcaagatagtttagtttggtaacatacaatacaatgcttattttggcctgtgttatttaatatattcatattgtt |
121 |
Q |
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| T |
32852659 |
catcatcagtgactaaaattaaaattcaagatagtttagtttggtaacatacaatacaatgcttattttggcttgtgttatttaatatattcatattgtt |
32852560 |
T |
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| Q |
122 |
gcctaaaacttgctttcatcatgatttgataatactgcaaataatccagaaaatatggtagtcatgttctgcattaatcatgttcacattgttaaggaat |
221 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32852559 |
gcctaaaacttgcattcatcatgatttgataatactgcaaataatccagaaaatatggtagtcatgttctgcattaatcatgttcacattgttaaggaat |
32852460 |
T |
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| Q |
222 |
tgaattcatgagcttaaatgacgacaatgcaaactagcctaatgtttctatgttattgacacaagtttgacgcatgcttcaaattcaaaatcacccgagt |
321 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32852459 |
tgaattcatgagcttaaatgacgacattgcaaactagcctaatgtttctatgttattgacagaagtttgacgcatgcttcaaattcaaaatcacccgagt |
32852360 |
T |
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| Q |
322 |
aataacatactttgaacttgcagctgttgaaaaagaataatagcatagtgcagtgttacactgtggttgtgctacatc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32852359 |
aataacatactttgaacttgcagctgttgaaaaagaataatagcatagtgcagtgttacactgtggttgtgctacatc |
32852282 |
T |
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