View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0954_low_19 (Length: 390)
Name: NF0954_low_19
Description: NF0954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0954_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 22 - 377
Target Start/End: Complemental strand, 35036637 - 35036282
Alignment:
| Q |
22 |
ccagcaacaatttcatatactctatctccatcaaggatgtgtggaagtataaacttgactgaatttgatcttatgaaacccccaaaagggtaccctaatt |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35036637 |
ccagcaacaatttcatatactctatctccatcaaggatgtgtgaaagtataaacttgactgaatttgatcttatgaaacccccaaaagggtaccctaatt |
35036538 |
T |
|
| Q |
122 |
catcattcactctttattctcatgaagcaaagtatcttgctttaaaaagaaattttgaatttggaagtggggttcttttttatgataggctttttaatgg |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35036537 |
catcattcactctttattctcatgaagcaaagtatcttgctttaaaaagaaattttgaatttggaagtggggttcttttttatgataggctttttaatgg |
35036438 |
T |
|
| Q |
222 |
tttgagcttaagtgatgcaattgggttcaaagggtgtagacaaattgaagggccttatgttgattacttagaacaagaatttggtaagcctgttcttctt |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35036437 |
tttgagcttaagtgatgcaattgggttcaaagggtgtagacaaattgaagggccttatgttgattacttagaacaagaatttggtaagcctgttcttctt |
35036338 |
T |
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| Q |
322 |
tcaggacctgttttacctgaaccacctaaaactgttttagatgaaaaatggggttc |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35036337 |
tcaggacctgttttacctgaaccacctaaaactgttttagatgaaaaatggggttc |
35036282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 22 - 377
Target Start/End: Original strand, 36288845 - 36289200
Alignment:
| Q |
22 |
ccagcaacaatttcatatactctatctccatcaaggatgtgtggaagtataaacttgactgaatttgatcttatgaaacccccaaaagggtaccctaatt |
121 |
Q |
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||||||||||| ||||||||| || ||| |||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
36288845 |
ccagcaacaatgtcatatactacataaccagaaaggatgtgtaaaggtataaacttgactgaatttgatcttatgatacccccaaaagggtaccctattt |
36288944 |
T |
|
| Q |
122 |
catcattcactctttattctcatgaagcaaagtatcttgctttaaaaagaaattttgaatttggaagtggggttcttttttatgataggctttttaatgg |
221 |
Q |
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|||| || | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||| |
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| T |
36288945 |
catcctttaatctttattctcatgaagcaaagttccttgctttaaaaagaaattttgaatttggaagtggagttattttttatgataggctttttattgg |
36289044 |
T |
|
| Q |
222 |
tttgagcttaagtgatgcaattgggttcaaagggtgtagacaaattgaagggccttatgttgattacttagaacaagaatttggtaagcctgttcttctt |
321 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36289045 |
tttgagcttaagtgatgcaatttggttcaaagggtgtagagaaattgaagggtcttatgttgattacttagaacaagagtttggtaagcctgttcttctt |
36289144 |
T |
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| Q |
322 |
tcaggacctgttttacctgaaccacctaaaactgttttagatgaaaaatggggttc |
377 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
36289145 |
tcaggacctgttttacctgaaccacctaaaaatactttagatgaaaaatggggttc |
36289200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 22 - 377
Target Start/End: Original strand, 35009296 - 35009651
Alignment:
| Q |
22 |
ccagcaacaatttcatatactctatctccatcaaggatgtgtggaagtataaacttgactgaatttgatcttatgaaacccccaaaagggtaccctaatt |
121 |
Q |
| |
|
||||||||| ||||||||| | |||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35009296 |
ccagcaacagtttcatataatgcatctccatcaaggatgtgtgaaggtacaaacttgactgaatttgatcttatgaaacccccaaaagggtaccctattt |
35009395 |
T |
|
| Q |
122 |
catcattcactctttattctcatgaagcaaagtatcttgctttaaaaagaaattttgaatttggaagtggggttcttttttatgataggctttttaatgg |
221 |
Q |
| |
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|||| || | |||||||| ||||||||||||| | ||||||||||||||||| || ||||||||||||||| || |||| ||||||||| | | | |||| |
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| T |
35009396 |
catcctttaatctttattatcatgaagcaaagcaccttgctttaaaaagaaaattggaatttggaagtgggatttttttctatgataggatctattatgg |
35009495 |
T |
|
| Q |
222 |
tttgagcttaagtgatgcaattgggttcaaagggtgtagacaaattgaagggccttatgttgattacttagaacaagaatttggtaagcctgttcttctt |
321 |
Q |
| |
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||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| |
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| T |
35009496 |
tttaagcttaagtgatgcaattgggttcaaaggtattagagaaattgaagggccttatgttgattacttggaacaagagtttggtaaacctgttcttctt |
35009595 |
T |
|
| Q |
322 |
tcaggacctgttttacctgaaccacctaaaactgttttagatgaaaaatggggttc |
377 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35009596 |
tcaggacctgttttacctgaaccacctaaaactgttttagatgaaaaatggggttc |
35009651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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