View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0954_low_2 (Length: 587)
Name: NF0954_low_2
Description: NF0954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0954_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 339 - 584
Target Start/End: Complemental strand, 26579229 - 26578984
Alignment:
| Q |
339 |
ggagaaaatcgacgaacatctaaaactctgacatcttgagagtgaaaccgatatagaacatgatgtgatatgttgttgatatgatgtggagaaaattgat |
438 |
Q |
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| T |
26579229 |
ggagataatcgatgaacatataaaactctgacatcttgagagtgaaagcgatataaaacgtgatgtgatatgttgttgatatgatatggagaaaatcgat |
26579130 |
T |
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| Q |
439 |
gaacattcaaaactctttaacatcttgagagagaaagggatacataacatgatatgatatgttgttgatatgatagaaaaagaaagattgaaataaaatg |
538 |
Q |
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| T |
26579129 |
gaacatccaaaactctttgacatcttgagagtgaaagggatacataacatgatatgatatgttgttgatatgatagaaagagaaatattgaaataaaatg |
26579030 |
T |
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| Q |
539 |
atgtgttgaatgagtaaagaagaattagaggcgtacatatatcatt |
584 |
Q |
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| T |
26579029 |
atgtgttgaatgagtaaagaagaattagaggcgtacatatatcatt |
26578984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 184 - 290
Target Start/End: Complemental strand, 26579414 - 26579308
Alignment:
| Q |
184 |
tagccatcatttctcaataatagaaccaattacttaccttaccaaacatatcaaccttattgttattatttaattaaacaaacccctagaggaaaaagaa |
283 |
Q |
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| T |
26579414 |
tagccatcatttctcaataatagaaccaattacttaccttaccaaacatatcaaccttattgttattatttaattaaacaaacccctagaggaaaaagaa |
26579315 |
T |
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| Q |
284 |
gcatctg |
290 |
Q |
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| T |
26579314 |
gcatctg |
26579308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 26579518 - 26579454
Alignment:
| Q |
80 |
gagtgagatgaatagttgaatctgtttgttttgatgcacagaaccagacaagttctacttttcat |
144 |
Q |
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| T |
26579518 |
gagtgagatgaatagttgaatctgtttgttttgatgcacagaaccagacaagttctacttttcat |
26579454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 489 - 521
Target Start/End: Original strand, 25680817 - 25680849
Alignment:
| Q |
489 |
gatatgatatgttgttgatatgatagaaaaaga |
521 |
Q |
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| T |
25680817 |
gatatgatatgttgttgatatgctagaaaaaga |
25680849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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