View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0954_low_20 (Length: 377)
Name: NF0954_low_20
Description: NF0954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0954_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 49 - 367
Target Start/End: Complemental strand, 10697881 - 10697563
Alignment:
| Q |
49 |
aatgacaaatattattatgttagttgctatgttagttttttctctttgttagaatttgaaccctaaacctccaaacccaacccacaaaaataatgtatat |
148 |
Q |
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| T |
10697881 |
aatgataaatattagtatattagttgctatgttagttttttctctttgttagaatttgaaccttaaacctccaaacccaacccacaaaaataatgtatat |
10697782 |
T |
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| Q |
149 |
ttttacatctaaaaattatagttagttgtgctatgtagatgattagtgattcacgagtacatgttattttcatcaaaattgtggttgaaatttgatgtga |
248 |
Q |
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| T |
10697781 |
ttttacatctaaaaattatagttagttgtgctatgtagatgattagtgattcacgagtacatgttattttcatgaaaattgtggttgaagtttgatgtga |
10697682 |
T |
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| Q |
249 |
aagttttgttttggaaaataacacaactgtttttatatgcatgtattcaattacaagtatattaaatatcatttctcacaagtcacaatgacaaatttac |
348 |
Q |
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| T |
10697681 |
aagttttgtattggaaaataacacaagtgtttttatatgcatgtattcaattacaagtatattaaatatcatttctcacaagtcacaaagacaaatttac |
10697582 |
T |
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| Q |
349 |
ggacgtcttgttgcctttg |
367 |
Q |
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| T |
10697581 |
ggacgtcttgttgcctttg |
10697563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 13762195 - 13762239
Alignment:
| Q |
49 |
aatgacaaatattattatgttagttgctatgttagttttttctct |
93 |
Q |
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| T |
13762195 |
aatgacaaatattaatatgttaattgttatgttagttttttctct |
13762239 |
T |
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