View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0954_low_21 (Length: 373)
Name: NF0954_low_21
Description: NF0954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0954_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 6395078 - 6395443
Alignment:
| Q |
1 |
agcttacctcatcaaaggattacatcttgtgtgttatgtatgttagctagtctaacatagtaattcaatcgagttctatagttctatcaagaatttgggt |
100 |
Q |
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| T |
6395078 |
agcttacctcatcaaaggattacatcttgcgtgttatgtatgttagctagtctaacatagtaattcaattgagttctatagttctatcaagaatttgggt |
6395177 |
T |
|
| Q |
101 |
ggaattttaccaagaatctggaaatttttgagatcccgtaagatcaaaggtaaagggaagacnnnnnnnnnactagtttaagagtttatagtgttactgc |
200 |
Q |
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| T |
6395178 |
ggaattttaccaagaatctggaaatttttgagatcccgtaagatcaaaggtaaagagaagactttttttttactagtttaagagtttatagtgttactgc |
6395277 |
T |
|
| Q |
201 |
tcctatagtatatctatcatataaaatgcatatgcnnnnnnntaggtgcattataacagttgatacatgttagccaactatgaaatttcttcccattctc |
300 |
Q |
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| T |
6395278 |
tcctatagtatatatctcatataaaatgcatatgcaaaaaaataggtacattataacagttgatacatgttagccaactatgaaatttcttcccattctc |
6395377 |
T |
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| Q |
301 |
atcaatttcttctgaatttgaaactggtttttataatttgtgtgttcaatttgcagattcatctca |
366 |
Q |
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| T |
6395378 |
atcaatttcttctgaatttgaaactggtttttataatttgtgtgttcaatttgcagattcttctca |
6395443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 281 - 360
Target Start/End: Original strand, 43597806 - 43597885
Alignment:
| Q |
281 |
tgaaatttcttcccattctcatcaatttcttctgaatttgaaactggtttttataatttgtgtgttcaatttgcagattc |
360 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| || ||||| || | | ||||||||||||| |||||| |
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| T |
43597806 |
tgaaatttcttaccattctcatcaatttcttctgaatttgaagctaatttttctagtatatgtgttcaatttgtagattc |
43597885 |
T |
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