View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0954_low_22 (Length: 360)
Name: NF0954_low_22
Description: NF0954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0954_low_22 |
 | |
|
| [»] scaffold0145 (1 HSPs) |
| |
|
| [»] chr4 (5 HSPs) |
| |
|
| [»] chr7 (5 HSPs) |
| |
|
| [»] chr3 (8 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] scaffold1001 (1 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: scaffold0145 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0145
Description:
Target: scaffold0145; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 80 - 360
Target Start/End: Complemental strand, 12785 - 12505
Alignment:
| Q |
80 |
gtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggat |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12785 |
gtgagatgaatactaaaataaaataaatggatgttggcatagaatgagtcacgcgtaaggtgtggaataacgacaagataaggtggtgatataagcggat |
12686 |
T |
|
| Q |
180 |
gataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaattatgag |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12685 |
gataaagagtaatgatggggagtcctataactatgacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgag |
12586 |
T |
|
| Q |
280 |
gttatattataataatgatgagaatgacgatgtcaatgttgttgtgatgatgagagtgtcaatggttaatttatgacgatg |
360 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
12585 |
tttatattataataatgatgagaatgatgatgtctatgttgttgtcatgatgagagtgtcgatggttaatttatgacgatg |
12505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 80 - 360
Target Start/End: Original strand, 16284932 - 16285212
Alignment:
| Q |
80 |
gtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggat |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
16284932 |
gtgagatgaatactaaaataaaataaatggatgttggcatagaatgagtcacgcgtaaggtgtggaataacgacaagataaggtggtgatataagtggat |
16285031 |
T |
|
| Q |
180 |
gataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaattatgag |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16285032 |
gataaagagtaatgatggggagtcctataactatgacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgag |
16285131 |
T |
|
| Q |
280 |
gttatattataataatgatgagaatgacgatgtcaatgttgttgtgatgatgagagtgtcaatggttaatttatgacgatg |
360 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
16285132 |
tttatattataataatgatgagaatgatgatgtctatgttgttgtcatgatgagagtgtcgatggttaatttatgacgatg |
16285212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 156 - 332
Target Start/End: Original strand, 18231449 - 18231623
Alignment:
| Q |
156 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
255 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||||||||||| ||| ||| ||| || ||||| ||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
18231449 |
gataaggtggtgatataaacggttgatagagagtaatgatgaggaatcc-ata-ctgtaacaaagagtgatgacgattaatattatatatatgtaaagaa |
18231546 |
T |
|
| Q |
256 |
attactacgatgggaaattatgaggttatattataataatgatgagaatgacgatgtcaatgttgttgtgatgatga |
332 |
Q |
| |
|
||||||||||| | |||| |||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
18231547 |
attactacgatagaaaatgatgatgttatattataataatgatgagaatgacgatgtctatgttattgtgatgatga |
18231623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 156 - 331
Target Start/End: Complemental strand, 11556070 - 11555897
Alignment:
| Q |
156 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
255 |
Q |
| |
|
|||||||||||||||||| || ||||| |||||||||||| || ||| ||| || | ||| ||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
11556070 |
gataaggtggtgatataaatggttgatagagagtaatgatgatgaatcc-ata-ctgtcacaaagagtgatgacgattaatattatatatatgtaaagaa |
11555973 |
T |
|
| Q |
256 |
attactacgatgggaaattatgaggttatattataataatgatgagaatgacgatgtcaatgttgttgtgatgatg |
331 |
Q |
| |
|
||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11555972 |
attactacgataggaaatgttgatgttatattataataatgatgagaatgacgatgtttatgttgttgtgatgatg |
11555897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 186 - 299
Target Start/End: Original strand, 11098355 - 11098468
Alignment:
| Q |
186 |
gagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaattatgaggttata |
285 |
Q |
| |
|
||||||||||| |||||||||||| | ||| |||||| ||||||| |||||||||||||||||||||||||||||| |||||||| |||| |||||| |
|
|
| T |
11098355 |
gagtaatgatgaggagtcctataattgtaatggagagtgatgacgattaatattatatatatgtaaagaaattactattgtgggaaataatgatgttata |
11098454 |
T |
|
| Q |
286 |
ttataataatgatg |
299 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
11098455 |
ttataataatgatg |
11098468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 11098291 - 11098356
Alignment:
| Q |
80 |
gtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtgga |
145 |
Q |
| |
|
|||||||||||| |||| ||||||||| ||||||| | || || ||||||||| ||||||||||| |
|
|
| T |
11098291 |
gtgagatgaataataaagtaaaataaagggatgttgacgtataaggagtcacgcataaggtgtgga |
11098356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 80 - 356
Target Start/End: Original strand, 10641216 - 10641492
Alignment:
| Q |
80 |
gtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggat |
179 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||| || ||||||||||||| ||| ||| ||||| ||| || |||||||||||||||||||||||| |
|
|
| T |
10641216 |
gtgagatgaataataaaataaagtaaatggatgttggcgtagaatgagtcacacgtgaggcgtggattaatgaagagataaggtggtgatataagcggat |
10641315 |
T |
|
| Q |
180 |
gataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaattatgag |
279 |
Q |
| |
|
|||| |||||||||| | |||||||||||||| | |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10641316 |
gatagagagtaatgacgaggagtcctataactgtgacagagagcgatgacgattaatattatatatatgtaaagaaattactacgatgggaaattatgag |
10641415 |
T |
|
| Q |
280 |
gttatattataataatgatgagaatgacgatgtcaatgttgttgtgatgatgagagtgtcaatggttaatttatgac |
356 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10641416 |
gttatattataataatgatgagaatgatgatgtctatgttgttgtgatgatgagagtgtcaatggttaatttatgac |
10641492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 81 - 313
Target Start/End: Complemental strand, 14970294 - 14970060
Alignment:
| Q |
81 |
tgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatg |
180 |
Q |
| |
|
||||| ||||| |||||||||||||| | ||||| ||||||||||||| ||||| ||||||| ||| || ||||| |||||||||||| ||||| |
|
|
| T |
14970294 |
tgagaagaataataaaataaaataaaggaatgttgatgtagaatgagtcactcgtaaagtgtggattaatgaagagataaagtggtgatataaatggatg |
14970195 |
T |
|
| Q |
181 |
ataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatat--atatgtaaagaaattactacgatgggaaattatga |
278 |
Q |
| |
|
||| |||||||||||| ||||||||| |||| | ||| ||| | |||||| ||||||||||| |||| || ||||||||| ||||||||||| |||| |
|
|
| T |
14970194 |
atagagagtaatgatgaggagtcctacaactgtgacaaagaatgatgacggttaatattatatatatatttatagaaattaccgcgatgggaaatgatga |
14970095 |
T |
|
| Q |
279 |
ggttatattataataatgatgagaatgacgatgtc |
313 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
14970094 |
tgttatattataataacaatgagaatgacgatgtc |
14970060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 158 - 355
Target Start/End: Original strand, 10906699 - 10906896
Alignment:
| Q |
158 |
taaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaat |
257 |
Q |
| |
|
|||||||||||||||| ||| ||| |||||||||||| | ||| |||||||||| ||||||||| | | | ||||||||| ||||||| || | || |
|
|
| T |
10906699 |
taaggtggtgatataaacggttgacaaagagtaatgacgaggaatcctataactgcgacagagagtgaagggggttaatattatgtatatgtcaacatat |
10906798 |
T |
|
| Q |
258 |
tactacgatgggaaattatgaggttatattataataatgatgagaatgacgatgtcaatgttgttgtgatgatgagagtgtcaatggttaatttatga |
355 |
Q |
| |
|
| || |||| ||||| |||| |||||||||||||||||||||||||||||||||| | |||| | ||||||||| ||| |||||||| |||||| |
|
|
| T |
10906799 |
aaataggatgtgaaatgatgatgttatattataataatgatgagaatgacgatgtctaaattgtcattatgatgagaatgttgatggttaaattatga |
10906896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 272
Target Start/End: Complemental strand, 9191181 - 9191065
Alignment:
| Q |
156 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
255 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||||||||||| ||| |||||||||| | | | ||||| |||| || | |||| |||||||||| || || |
|
|
| T |
9191181 |
gataaggtggtgatataaacggttgatagagagtaatgatgaggaatcctataactgtgataaagagtgatgatgattgatataatatatatgtgaataa |
9191082 |
T |
|
| Q |
256 |
attactacgatgggaaa |
272 |
Q |
| |
|
|| | ||||||| |||| |
|
|
| T |
9191081 |
ataaatacgatgagaaa |
9191065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 153; Significance: 5e-81; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 156 - 360
Target Start/End: Original strand, 22614701 - 22614905
Alignment:
| Q |
156 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
255 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
22614701 |
gataaggtggtgatataagcggatgatagagagtattgatgaggagtcctataactatgacagagagtgatgacgattaatattatatatatgtaaagaa |
22614800 |
T |
|
| Q |
256 |
attactacgatgggaaattatgaggttatattataataatgatgagaatgacgatgtcaatgttgttgtgatgatgagagtgtcaatggttaatttatga |
355 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
22614801 |
attactacgatgggaaatgatgaggttatattataataatgaagagaatgacgatgtatatattgttgtgatgatgagagtgtcgatggttaacttatga |
22614900 |
T |
|
| Q |
356 |
cgatg |
360 |
Q |
| |
|
||||| |
|
|
| T |
22614901 |
cgatg |
22614905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 156 - 360
Target Start/End: Complemental strand, 11655631 - 11655427
Alignment:
| Q |
156 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||| ||||||||||| || | ||||||||| | || || ||||||||||||||||||||||| |
|
|
| T |
11655631 |
gataaggtggtgatataagcggatgataaagaatattgatgaggagtcctatagctgtgacagagagtgacgatgattaatattatatatatgtaaagaa |
11655532 |
T |
|
| Q |
256 |
attactacgatgggaaattatgaggttatattataataatgatgagaatgacgatgtcaatgttgttgtgatgatgagagtgtcaatggttaatttatga |
355 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
11655531 |
attactacgatggaaaatgatgaggttatattataataatgaagagaatgacgatgtctatgttgttgtgatgatgagagtgtccatggttaacttatga |
11655432 |
T |
|
| Q |
356 |
cgatg |
360 |
Q |
| |
|
||||| |
|
|
| T |
11655431 |
cgatg |
11655427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 83 - 359
Target Start/End: Complemental strand, 20026200 - 20025924
Alignment:
| Q |
83 |
agatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgat |
182 |
Q |
| |
|
||||||||| ||||||| |||||| ||||||| | | ||||||||||||||||||||| || ||| || |||||||| ||||||||| | ||||| |
|
|
| T |
20026200 |
agatgaataataaaatagaataaagggatgttgacgtcaaatgagtcacgcgtaaggtgttgattaatgaagagataaggttgtgatataaacatatgat |
20026101 |
T |
|
| Q |
183 |
aaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaattatgaggtt |
282 |
Q |
| |
|
| ||| |||||| | ||||||||| |||||| ||| ||||| ||||||| | |||||||||||||||||||||||||| | ||||| |||| |||| ||| |
|
|
| T |
20026100 |
agagaataatgaagaggagtcctacaactatgacaaagagtgatgacgattcatattatatatatgtaaagaaattaccatgatggcaaatgatgatgtt |
20026001 |
T |
|
| Q |
283 |
atattataataatgatgagaatgacgatgtcaatgttgttgtgatgatgagagtgtcaatggttaatttatgacgat |
359 |
Q |
| |
|
|||||||||||| |||| ||||| |||||| ||||| |||| |||||||||| || ||||||||| ||||| |||| |
|
|
| T |
20026000 |
atattataataacaatgacaatgatgatgtctatgtttttgtcatgatgagagcgttaatggttaagttatgccgat |
20025924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 198 - 299
Target Start/End: Original strand, 13477489 - 13477596
Alignment:
| Q |
198 |
ggagtcctataactataacagagagtaatgacgagtaatattata------tatatgtaaagaaattactacgatgggaaattatgaggttatattataa |
291 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||| |||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
13477489 |
ggagtcctataactgtaacaaagagtgatgacgattaatattatatatatatatatgtaaagaaattactacgatgggaaaggatgatgttatattataa |
13477588 |
T |
|
| Q |
292 |
taatgatg |
299 |
Q |
| |
|
|||||||| |
|
|
| T |
13477589 |
taatgatg |
13477596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 309
Target Start/End: Original strand, 4531649 - 4531873
Alignment:
| Q |
85 |
atgaatactaaaataaaataaatggatgttagcatagaa-tgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgata |
183 |
Q |
| |
|
||||||| |||||||||||| | || |||| || || || ||||||||| |||||| |||| ||| || |||||||||||||||||| ||| ||||| |
|
|
| T |
4531649 |
atgaataataaaataaaatagaggggtgttggcgtataaatgagtcacgtgtaagggttggattaatgaagagataaggtggtgatataaacggttgata |
4531748 |
T |
|
| Q |
184 |
aagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaattatga-ggtt |
282 |
Q |
| |
|
|||||||||||| ||| ||| |||| | | || ||||| ||||| | | |||||||||||||||||| |||| | ||| ||| ||||| || | | || |
|
|
| T |
4531749 |
gagagtaatgatgaggaatcc-ataa-tgtgacgaagagtgatgacaattgatattatatatatgtaaataaataaatacaatgagaaataataatgctt |
4531846 |
T |
|
| Q |
283 |
atattataataatgatgagaatgacga |
309 |
Q |
| |
|
||||| || | |||||||| ||||||| |
|
|
| T |
4531847 |
atattttattgatgatgaggatgacga |
4531873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 80 - 360
Target Start/End: Original strand, 14481522 - 14481808
Alignment:
| Q |
80 |
gtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggat |
179 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||| || ||||||||||||||||||||| ||||| ||| || |||| ||||||| ||||||||| |
|
|
| T |
14481522 |
gtgagatgaataataaaataaaataaagggatgttggcgtagaatgagtcacgcgtaaggagtggattaatgaagagatacaatggtgatgtaagcggat |
14481621 |
T |
|
| Q |
180 |
gataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattata------tatatgtaaagaaattactacgatgggaaat |
273 |
Q |
| |
|
|||| |||||||||||| |||||||||||||| | ||| ||||| |||| || |||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
14481622 |
gatagagagtaatgatgaggagtcctataactgtgacaaagagtgatgatgattaatattatatatatatatatgtaaagaaattactacgatgggacat |
14481721 |
T |
|
| Q |
274 |
tatgaggttatattataataatgatgagaatgacgatgtcaatgttgttgtgatgatgagagtgtcaatggttaatttatgacgatg |
360 |
Q |
| |
|
||||||||||| ||||||| ||||||| ||||||||||| |||||||||||||||||| |||||| |||||||| ||||||||||| |
|
|
| T |
14481722 |
gatgaggttatactataatattgatgaggatgacgatgtctatgttgttgtgatgatgatagtgtcgatggttaacttatgacgatg |
14481808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 80 - 247
Target Start/End: Complemental strand, 17791108 - 17790941
Alignment:
| Q |
80 |
gtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggat |
179 |
Q |
| |
|
||||| |||||| || ||||| |||| |||||| ||| ||||||||| |||| |||| ||||||| ||| || ||||||||| || ||||||||||| |
|
|
| T |
17791108 |
gtgaggtgaataatacgataaagtaaagggatgtcagcgtagaatgagccacgagtaaagtgtggattaatgaagagataaggtgatggtataagcggat |
17791009 |
T |
|
| Q |
180 |
gataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatat |
247 |
Q |
| |
|
|| | |||||||||||| |||||||||||||| | ||||||||| |||| || ||||||||||||||| |
|
|
| T |
17791008 |
gaaagagagtaatgatgaggagtcctataactttgacagagagtgatgatgattaatattatatatat |
17790941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 80 - 247
Target Start/End: Complemental strand, 19099548 - 19099381
Alignment:
| Q |
80 |
gtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggat |
179 |
Q |
| |
|
||||| |||||| || ||||| |||| |||||| ||| ||||||||| |||| |||| ||||||| ||| || ||||||||| || ||||||||||| |
|
|
| T |
19099548 |
gtgaggtgaataatacgataaagtaaagggatgtcagcgtagaatgagccacgagtaaagtgtggattaatgaagagataaggtgatggtataagcggat |
19099449 |
T |
|
| Q |
180 |
gataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatat |
247 |
Q |
| |
|
|| | |||||||||||| |||||||||||||| | ||||||||| |||| || ||||||||||||||| |
|
|
| T |
19099448 |
gaaagagagtaatgatgaggagtcctataactttgacagagagtgatgatgattaatattatatatat |
19099381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 239 - 353
Target Start/End: Complemental strand, 17790923 - 17790809
Alignment:
| Q |
239 |
tatatatatgtaaagaaattactacgatgggaaattatgaggttatattataataatgatgagaatgacgatgtcaatgttgttgtgatgatgagagtgt |
338 |
Q |
| |
|
||||||||| || | | ||||||||||| | |||| |||||||||||||| ||| ||||| ||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
17790923 |
tatatatatatatatatattactacgatagaaaatgatgaggttatattagaatgatgataagaatgacgatgtatatgttgttgtgatgatgagagagt |
17790824 |
T |
|
| Q |
339 |
caatggttaatttat |
353 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
17790823 |
cgatggttaatttat |
17790809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 239 - 353
Target Start/End: Complemental strand, 19099365 - 19099251
Alignment:
| Q |
239 |
tatatatatgtaaagaaattactacgatgggaaattatgaggttatattataataatgatgagaatgacgatgtcaatgttgttgtgatgatgagagtgt |
338 |
Q |
| |
|
||||||||| || | | ||||||||||| | |||| |||||||||||||| ||| ||||| ||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
19099365 |
tatatatatatatatatattactacgatagaaaatgatgaggttatattagaatgatgataagaatgacgatgtatatgttgttgtgatgatgagagagt |
19099266 |
T |
|
| Q |
339 |
caatggttaatttat |
353 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
19099265 |
cgatggttaatttat |
19099251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 22159931 - 22159871
Alignment:
| Q |
163 |
tggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagt |
223 |
Q |
| |
|
||||||||||| ||| ||||| |||||||||||| ||| |||||||||||| ||| ||||| |
|
|
| T |
22159931 |
tggtgatataaacggttgatagagagtaatgatgaggaatcctataactatgacaaagagt |
22159871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 21975335 - 21975275
Alignment:
| Q |
163 |
tggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagt |
223 |
Q |
| |
|
||||||||||| ||| ||||| |||||||||||| ||| ||| |||||||| ||| ||||| |
|
|
| T |
21975335 |
tggtgatataaacggttgatagagagtaatgatgaggaatccaataactatgacaaagagt |
21975275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 21997766 - 21997706
Alignment:
| Q |
163 |
tggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagt |
223 |
Q |
| |
|
||||||||||| ||| ||||| |||||||||||| ||| ||| |||||||| ||| ||||| |
|
|
| T |
21997766 |
tggtgatataaacggttgatagagagtaatgatgaggaatccaataactatgacaaagagt |
21997706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 7e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 80 - 360
Target Start/End: Original strand, 24831922 - 24832208
Alignment:
| Q |
80 |
gtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggat |
179 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||| || ||||||||||||||||||||| || || ||| || |||| | ||||||| ||||||||| |
|
|
| T |
24831922 |
gtgagatgaataataaaataaaataaagggatgttggcgtagaatgagtcacgcgtaaggagttgactaatgaagagatacgatggtgatgtaagcggat |
24832021 |
T |
|
| Q |
180 |
gataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatat------atgtaaagaaattactacgatgggaaat |
273 |
Q |
| |
|
|||| |||||||||||| |||||||||||| | | ||| ||||| |||| || ||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
24832022 |
gatagagagtaatgatgaggagtcctataattgtgacaaagagtgatgatgattaatattatatatacatatatgtaaagaaattactacgatgagaaat |
24832121 |
T |
|
| Q |
274 |
tatgaggttatattataataatgatgagaatgacgatgtcaatgttgttgtgatgatgagagtgtcaatggttaatttatgacgatg |
360 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||| ||||||| |||||||||| |||||| |||||||| ||||||||||| |
|
|
| T |
24832122 |
gatgaggttatactataatattgatgagaatgacgatgtctatgttgtcgtgatgatgatagtgtcgatggttaacttatgacgatg |
24832208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 162 - 348
Target Start/End: Complemental strand, 13935849 - 13935664
Alignment:
| Q |
162 |
gtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattact |
261 |
Q |
| |
|
|||||||||||| ||| ||||| ||||||||||| ||| ||||||||| | ||| ||||| ||||| | | ||| ||||| |||||||| ||| | | |
|
|
| T |
13935849 |
gtggtgatataaacggttgatagagagtaatgattaggaatcctataacggtgacaaagagtgatgacaattgatactatatctatgtaaatgaataaat |
13935750 |
T |
|
| Q |
262 |
acgatgggaaattatgaggttatattataataatgatgagaatgacgatgtcaatgttgttgtgatgatgagagtgtcaatggttaa |
348 |
Q |
| |
|
||||||| |||| |||| |||||||||||||||||| || || ||| ||||| | |||||||||||||||||||||| |||||||| |
|
|
| T |
13935749 |
acgatgg-aaataatgatgttatattataataatgaagataacgactatgtctacattgttgtgatgatgagagtgtcgatggttaa |
13935664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1001 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold1001
Description:
Target: scaffold1001; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 156 - 360
Target Start/End: Complemental strand, 1545 - 1342
Alignment:
| Q |
156 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
255 |
Q |
| |
|
||||| ||| ||| ||| |||||||||| |||||| | ||| ||||||||||||| | | ||||||| ||||| | ||||||| ||||| || ||| || |
|
|
| T |
1545 |
gataatgtgatgacatatgcggatgatatagagtatttatgaggagtcctataaccgtgaaagagagtgatgactattaatatt-tatatgtggaaataa |
1447 |
T |
|
| Q |
256 |
attactacgatgggaaattatgaggttatattataataatgatgagaatgacgatgtcaatgttgttgtgatgatgagagtgtcaatggttaatttatga |
355 |
Q |
| |
|
||||| || |||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
1446 |
attacaacaatggaaaatgatgaggttatattataataatgatgagaatgacgatgtctatgttgttgtgatgatgatagtgtagatggttaacctatga |
1347 |
T |
|
| Q |
356 |
cgatg |
360 |
Q |
| |
|
||||| |
|
|
| T |
1346 |
cgatg |
1342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 85 - 332
Target Start/End: Original strand, 44586360 - 44586609
Alignment:
| Q |
85 |
atgaatactaaaataaaataaatggatgttagcatagaa-tgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgata |
183 |
Q |
| |
|
||||||| | |||||||||| | ||||||| ||||||| ||||||| |||||||| |||| ||| | |||||||||||||||||| ||| ||||| |
|
|
| T |
44586360 |
atgaataatgaaataaaatagagggatgttgacatagaaatgagtcatgcgtaagggttggattaataaagagataaggtggtgatataaacggttgata |
44586459 |
T |
|
| Q |
184 |
aagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaattatgaggtta |
283 |
Q |
| |
|
|||||||||||| ||| ||| ||| || ||||| ||||| ||||||| || ||||||||||||||||||||||||||||||| ||||| |||| |||| |
|
|
| T |
44586460 |
gagagtaatgatgaggaatcc-ata-ctgtaacaaagagtgatgacgattagtattatatatatgtaaagaaattactacgatatgaaatgatgatgtta |
44586557 |
T |
|
| Q |
284 |
---tattataataatgatgagaatgacgatgtcaatgttgttgtgatgatga |
332 |
Q |
| |
|
||| ||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
44586558 |
aattataataataatgatgagaatgacggtgtctgtgttgttgtgatgatga |
44586609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 189
Target Start/End: Complemental strand, 24786377 - 24786268
Alignment:
| Q |
80 |
gtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggat |
179 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||| | |||||| |||||| |||||||| | || ||| || | || |||||| ||||||| || || |
|
|
| T |
24786377 |
gtgagatgaataataaaataaaataaagggatgttgacgtagaataagtcacacgtaaggtatagattaatgaaaagagaaggtgaagatataaacgaat |
24786278 |
T |
|
| Q |
180 |
gataaagagt |
189 |
Q |
| |
|
|||| ||||| |
|
|
| T |
24786277 |
gatagagagt |
24786268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 16862432 - 16862347
Alignment:
| Q |
162 |
gtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatat |
247 |
Q |
| |
|
||||| |||||| ||| ||||||||| |||||||| ||| ||||||||||| |||| || || || || ||||||||||||||| |
|
|
| T |
16862432 |
gtggtaatataaacggttgataaagactaatgatgaggaatcctataactacaacaaagggtgtcgatgattaatattatatatat |
16862347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 294 - 360
Target Start/End: Original strand, 1567212 - 1567278
Alignment:
| Q |
294 |
atgatgagaatgacgatgtcaatgttgttgtgatgatgagagtgtcaatggttaatttatgacgatg |
360 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| ||||| | ||| |||||||||||||||||||| |
|
|
| T |
1567212 |
atgatgagaatgacgatgtctatgttattgtgaggatgataatgttgatggttaatttatgacgatg |
1567278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 273
Target Start/End: Original strand, 1567041 - 1567152
Alignment:
| Q |
162 |
gtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattact |
261 |
Q |
| |
|
|||||||||||| ||| |||| || ||||| ||| ||| || ||||| | | ||| ||||| ||||||| | |||||||||||||||||| |||| | | |
|
|
| T |
1567041 |
gtggtgatataaacggtggatagagggtaataatgaggaatcatataattgtgacaaagagtgatgacgattgatattatatatatgtaaacaaataaat |
1567140 |
T |
|
| Q |
262 |
acgatgggaaat |
273 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
1567141 |
acgatgagaaat |
1567152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University