View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0954_low_24 (Length: 345)

Name: NF0954_low_24
Description: NF0954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0954_low_24
NF0954_low_24
[»] chr6 (13 HSPs)
chr6 (79-252)||(23391348-23391521)
chr6 (86-252)||(23587035-23587201)
chr6 (86-252)||(23583152-23583317)
chr6 (86-247)||(23289884-23290045)
chr6 (86-253)||(23266447-23266614)
chr6 (86-249)||(23251920-23252083)
chr6 (86-249)||(23257896-23258059)
chr6 (86-253)||(23283565-23283732)
chr6 (86-253)||(23634068-23634235)
chr6 (86-249)||(23247508-23247671)
chr6 (96-252)||(23594101-23594257)
chr6 (96-240)||(23506901-23507045)
chr6 (183-253)||(23506726-23506796)
[»] chr5 (1 HSPs)
chr5 (136-192)||(3996385-3996441)


Alignment Details
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 79 - 252
Target Start/End: Complemental strand, 23391521 - 23391348
Alignment:
Q  79 gaaaagaaacttaaatgaatgggtgtgtgaaatgagggaaccaaacaagaagactaaaatttggctaggcacttttccaactgcggagatggcagcccga 178  Q
    ||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23391521 gaaaagaaacttagataaatgggtgtgtgaaatgagggaaccaaataagaagactaaaatttggctaggcacttttccaactgcggagatggcagcccga 23391422  T
Q  179 gcacatgatgttgccgcaatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggct 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23391421 gcacatgatgttgccgcaatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggct 23391348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 86 - 252
Target Start/End: Complemental strand, 23587201 - 23587035
Alignment:
Q  86 aacttaaatgaatgggtgtgtgaaatgagggaaccaaacaagaagactaaaatttggctaggcacttttccaactgcggagatggcagcccgagcacatg 185  Q
    |||||| || ||||||| |||||||||||||| || |||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| || || |    
T  23587201 aacttagataaatgggtttgtgaaatgagggagcctaacaagaagactaagatttggctagggacttttccaactgccgagatggcagcccgtgcccacg 23587102  T
Q  186 atgttgccgcaatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggct 252  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  23587101 atgttgctgcaatggcattgaggggccgctacgcttgtctcaactttgcagactcagcgtggcggct 23587035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 86 - 252
Target Start/End: Complemental strand, 23583317 - 23583152
Alignment:
Q  86 aacttaaatgaatgggtgtgtgaaatgagggaaccaaacaagaagactaaaatttggctaggcacttttccaactgcggagatggcagcccgagcacatg 185  Q
    |||||| || ||||||| |||||||||||| | || |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| || || |    
T  23583317 aacttagataaatgggtttgtgaaatgaggaagcctaacaagaagactaagatttggctagggacttttccaactgcggagatggcaacccgtgcccacg 23583218  T
Q  186 atgttgccgcaatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggct 252  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||    
T  23583217 atgttgctgcaatggcattga-gggccgctacgcctgtctcaactttgcagactcagcatggcggct 23583152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 86 - 247
Target Start/End: Complemental strand, 23290045 - 23289884
Alignment:
Q  86 aacttaaatgaatgggtgtgtgaaatgagggaaccaaacaagaagactaaaatttggctaggcacttttccaactgcggagatggcagcccgagcacatg 185  Q
    |||||| || |||||||||||||||||||||||||||| ||||||||||  ||||||||||| |||||| |||| || |||||||| ||||| ||||| |    
T  23290045 aacttagataaatgggtgtgtgaaatgagggaaccaaataagaagactaggatttggctagggacttttgcaacagccgagatggctgcccgtgcacacg 23289946  T
Q  186 atgttgccgcaatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtgg 247  Q
    | ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23289945 acgttgcagcaattgcattgaggggccgctacgcctgtctcaactttgcagactcggcgtgg 23289884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 86 - 253
Target Start/End: Complemental strand, 23266614 - 23266447
Alignment:
Q  86 aacttaaatgaatgggtgtgtgaaatgagggaaccaaacaagaagactaaaatttggctaggcacttttccaactgcggagatggcagcccgagcacatg 185  Q
    |||||| || ||||||| ||||||||||||||||| |||| |||||||| |||||||||||| ||||||||||| || ||||||||||||||||| || |    
T  23266614 aacttagataaatgggtttgtgaaatgagggaacccaacacgaagactagaatttggctaggaacttttccaacagccgagatggcagcccgagcccacg 23266515  T
Q  186 atgttgccgcaatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctt 253  Q
    ||||||| || |||||||||||||| ||||||||||||||||| |||||||| || | ||||||||||    
T  23266514 atgttgctgcgatggcattgaggggtcgctacgcctgtctcaattttgcagattcggtgtggcggctt 23266447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 86 - 249
Target Start/End: Complemental strand, 23252083 - 23251920
Alignment:
Q  86 aacttaaatgaatgggtgtgtgaaatgagggaaccaaacaagaagactaaaatttggctaggcacttttccaactgcggagatggcagcccgagcacatg 185  Q
    ||||||||| ||||||| |||||||||||||| || ||||  |||| ||  ||||||||||| ||||||||||| || ||||||||||||||||| || |    
T  23252083 aacttaaataaatgggtttgtgaaatgagggagccgaacacaaagaataggatttggctaggaacttttccaacagccgagatggcagcccgagcccacg 23251984  T
Q  186 atgttgccgcaatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcg 249  Q
    |||||||||| || ||||||||||||||||| ||||||||||| ||||||||||| | ||||||    
T  23251983 atgttgccgcgatagcattgaggggccgctatgcctgtctcaattttgcagactcggtgtggcg 23251920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 86 - 249
Target Start/End: Complemental strand, 23258059 - 23257896
Alignment:
Q  86 aacttaaatgaatgggtgtgtgaaatgagggaaccaaacaagaagactaaaatttggctaggcacttttccaactgcggagatggcagcccgagcacatg 185  Q
    |||||| || ||||||||||||||||||||||||| ||||  ||||| |  |||||||| || |||||||||||  | || |||||||||||||| || |    
T  23258059 aacttagataaatgggtgtgtgaaatgagggaacccaacacaaagaccaggatttggctggggacttttccaacacccgaaatggcagcccgagcccacg 23257960  T
Q  186 atgttgccgcaatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcg 249  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | ||||||    
T  23257959 atgttgccgcaatggcattgaggggccgctatgcctgtctcaattttgcagactcggtgtggcg 23257896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 86 - 253
Target Start/End: Complemental strand, 23283732 - 23283565
Alignment:
Q  86 aacttaaatgaatgggtgtgtgaaatgagggaaccaaacaagaagactaaaatttggctaggcacttttccaactgcggagatggcagcccgagcacatg 185  Q
    |||||| || ||||||| ||||||||||||||||| ||||| |||||||  ||||||||||| ||||||||||| || |||||||| || |||||||| |    
T  23283732 aacttagataaatgggtttgtgaaatgagggaacccaacaaaaagactaggatttggctagggacttttccaacggctgagatggctgcacgagcacacg 23283633  T
Q  186 atgttgccgcaatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctt 253  Q
    | ||||| || |||||||| ||||||||||| ||||||||||||||||||||||| | |||| |||||    
T  23283632 acgttgcagccatggcattaaggggccgctatgcctgtctcaactttgcagactcggtgtggaggctt 23283565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 86 - 253
Target Start/End: Complemental strand, 23634235 - 23634068
Alignment:
Q  86 aacttaaatgaatgggtgtgtgaaatgagggaaccaaacaagaagactaaaatttggctaggcacttttccaactgcggagatggcagcccgagcacatg 185  Q
    |||||| || |||||||||||||||||||||| || |||||||||||||| ||||||||||| ||||||||||| || ||||||||||| ||||||||||    
T  23634235 aacttagataaatgggtgtgtgaaatgagggagcctaacaagaagactaagatttggctagggacttttccaacggccgagatggcagcacgagcacatg 23634136  T
Q  186 atgttgccgcaatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctt 253  Q
    |||| || ||| ||||||| || || ||| |||||||||| || ||||| ||||| || | |||||||    
T  23634135 atgtcgcggcattggcattaagaggtcgcaacgcctgtcttaattttgctgactctgcctcgcggctt 23634068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 86 - 249
Target Start/End: Complemental strand, 23247671 - 23247508
Alignment:
Q  86 aacttaaatgaatgggtgtgtgaaatgagggaaccaaacaagaagactaaaatttggctaggcacttttccaactgcggagatggcagcccgagcacatg 185  Q
    ||||||||| ||||||| |||||||||||||| || ||||  |||| ||  |||||||| || |||||||||||  |||||||||| |||||||| || |    
T  23247671 aacttaaataaatgggtttgtgaaatgagggagccgaacacaaagaataggatttggctgggaacttttccaacaccggagatggctgcccgagcccacg 23247572  T
Q  186 atgttgccgcaatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcg 249  Q
    ||||||| ||||||||||||||||||||||| ||||||||||| ||  ||||||| | ||||||    
T  23247571 atgttgctgcaatggcattgaggggccgctatgcctgtctcaatttctcagactcggtgtggcg 23247508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 96 - 252
Target Start/End: Complemental strand, 23594257 - 23594101
Alignment:
Q  96 aatgggtgtgtgaaatgagggaaccaaacaagaagactaaaatttggctaggcacttttccaactgcggagatggcagcccgagcacatgatgttgccgc 195  Q
    |||||||||||||||||||||| || ||||||| |||||| || |||||||| ||||||||||  || ||||||| ||| ||||| |||||||| ||  |    
T  23594257 aatgggtgtgtgaaatgagggagcctaacaagatgactaagatatggctaggaacttttccaatggctgagatggaagcacgagcccatgatgtcgcgac 23594158  T
Q  196 aatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggct 252  Q
    | |||||||||| ||  | ||||| |||||||||||||||||||| || ||||||||    
T  23594157 attggcattgagaggttgttacgcttgtctcaactttgcagactctgcatggcggct 23594101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 23507045 - 23506901
Alignment:
Q  96 aatgggtgtgtgaaatgagggaaccaaacaagaagactaaaatttggctaggcacttttccaactgcggagatggcagcccgagcacatgatgttgccgc 195  Q
    |||||||||||||||| ||  | || ||||| ||||| || ||||||||||| ||||||||||| || ||||||||||| || || ||||||||||| ||    
T  23507045 aatgggtgtgtgaaataagacagcctaacaaaaagaccaagatttggctaggaacttttccaacagccgagatggcagctcgggcccatgatgttgcggc 23506946  T
Q  196 aatggcattgaggggccgctacgcctgtctcaactttgcagactc 240  Q
    | |||| ||||  ||  || |||||||||||||||||||||||||    
T  23506945 actggcgttgaaaggtggcgacgcctgtctcaactttgcagactc 23506901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 23506796 - 23506726
Alignment:
Q  183 atgatgttgccgcaatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctt 253  Q
    ||||||| || ||| ||||||| || || ||| ||||||||||||||||||||||||| || | |||||||    
T  23506796 atgatgtcgcggcattggcattaagaggtcgcaacgcctgtctcaactttgcagactcggcctcgcggctt 23506726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 3996441 - 3996385
Alignment:
Q  136 aatttggctaggcacttttccaactgcggagatggcagcccgagcacatgatgttgc 192  Q
    ||||||||||||||||| ||||||  | ||||||||||| ||||| ||||| |||||    
T  3996441 aatttggctaggcacttatccaacacccgagatggcagctcgagcccatgacgttgc 3996385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University