View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0954_low_25 (Length: 323)
Name: NF0954_low_25
Description: NF0954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0954_low_25 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 79 - 323
Target Start/End: Original strand, 37336849 - 37337095
Alignment:
| Q |
79 |
gagtgagatgaataatgaatcttgttagtttcctctaaaac--aaatgaatcttgttatttaattttcaccccacgagtgaggagatgcacatttatttt |
176 |
Q |
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| T |
37336849 |
gagtgaaatgaataatgaatcttgttagtttcctctaaaaataaaatgaatcttgttatttaattttcaccccacgagtgaggagatgcacatttatttt |
37336948 |
T |
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| Q |
177 |
cttcctccctgctctttccaaattttgagtgttttttacgcaaaccatttactgtctccttcttctctcataccatacatctttttcttcattccctcat |
276 |
Q |
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| T |
37336949 |
cttcctccctgctctttccaaattttgagtgttttttacgcaaaccatttactgtctccttcttctctcataccatacatctttttcttcattccctcat |
37337048 |
T |
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| Q |
277 |
ttggactatcttctttgagtacacaccaaactcatttaacaaaattt |
323 |
Q |
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| T |
37337049 |
ttggactatcttctttgagtacaaaccaaactcatttaacaaaattt |
37337095 |
T |
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