View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0954_low_27 (Length: 303)
Name: NF0954_low_27
Description: NF0954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0954_low_27 |
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| [»] scaffold0608 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 29 - 290
Target Start/End: Original strand, 46926021 - 46926279
Alignment:
| Q |
29 |
agtatatgtttttctttcttcaaaatagtcaacattaatttgatttgaacctacattgtggaagtttatgccaaaattagatcattaaactaatattaat |
128 |
Q |
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| T |
46926021 |
agtatatgtttttctttcttcaaaatagtcaacattaatttgatttgaacctacattgtggaagtttatgccaaaattagatcattaaactaatattaat |
46926120 |
T |
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| Q |
129 |
tcaacttgtgtatgaaggatcatgtataaattgggttgcaggcaaaggagagatgcatcaacacaatattcactcacattgagatcatcattttcaagaa |
228 |
Q |
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| T |
46926121 |
tcaacttgtgtatgaaggatcatgtataaa---ggttgcaggcaaaggagagatgcatcaacacaatattcactcacattgagatcatcattttcaagaa |
46926217 |
T |
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| Q |
229 |
acaatggactttgtaagttgtactcttgtttttctgttaacatgcttatccattcatgctct |
290 |
Q |
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| T |
46926218 |
acaatggactttgtaagttgtactcttgtttttctgttaacatgcttatccattcatgctct |
46926279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 11108002 - 11107962
Alignment:
| Q |
119 |
taatattaattcaacttgtgtatgaaggatcatgtataaat |
159 |
Q |
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| T |
11108002 |
taattttaattcaacttgtgtttgagggatcatgtataaat |
11107962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0608
Description:
Target: scaffold0608; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 3441 - 3401
Alignment:
| Q |
119 |
taatattaattcaacttgtgtatgaaggatcatgtataaat |
159 |
Q |
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| T |
3441 |
taattttaattcaacttgtgtttgagggatcatgtataaat |
3401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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