View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0954_low_34 (Length: 251)

Name: NF0954_low_34
Description: NF0954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0954_low_34
NF0954_low_34
[»] chr1 (1 HSPs)
chr1 (1-237)||(38246249-38246485)


Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 38246249 - 38246485
Alignment:
Q  1 tcatcatcgacgaaggatcttacgagactattcaacggtctcactttaatcgctaacgaatatgccaaacgttcattacccgccagaacttcagatttcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38246249 tcatcatcgacgaaggatcttacgagactattcaacggtctcactttaatcgctaacgaatatgccaaacgttcattacccgccagaacttcagatttcg 38246348  T
Q  101 aaaccctaattaaaaccgctcttctctccgccaccaacgtctccggcatcaccaaaggacaacttcgtcaattctcccctcctcaaccctccaacgactc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38246349 aaaccctaattaaaaccgctcttctctccgccaccaacgtctccggcatcaccaaaggacaacttcgtcaattctcccctcctcaaccctccaacgactc 38246448  T
Q  201 ttcctccgattcttcttccagtactccttccgttgtt 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  38246449 ttcctccgattcttcttccagtactccttccgttgtt 38246485  T

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