View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0954_low_36 (Length: 232)
Name: NF0954_low_36
Description: NF0954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0954_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 35154896 - 35155049
Alignment:
| Q |
1 |
aaatgattgaaaaaatcgacgtaaatggagatggatatgttgacattgacgaatttggtgagttataccaaacaataatggatgaaaaagatgaggagga |
100 |
Q |
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| T |
35154896 |
aaatgattgaaaaaatcgacgtaaatggagatggatatgttgacattgacgaatttggtgagttataccaaacaataatggatgaaaaagatgaggagga |
35154995 |
T |
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| Q |
101 |
ggatatgaaagaggcattcaatgtgtttgatcaaaatggagatgggttcatatc |
154 |
Q |
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| T |
35154996 |
ggatatgaaagaggcattcaatgtgtttgatcaaaatggagatgggttcatatc |
35155049 |
T |
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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 18520261 - 18520193
Alignment:
| Q |
1 |
aaatgattgaaaaaatcgacgtaaatggagatggatatgttgacattgacgaatttggtgagttatacc |
69 |
Q |
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| T |
18520261 |
aaatgattgaaaaaatcaacgtaaatggagacgaatatgttgacattgacgaatttagcgagttctacc |
18520193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 139
Target Start/End: Original strand, 25393557 - 25393648
Alignment:
| Q |
48 |
gacgaatttggtgagttataccaaacaataatggatgaaaaagatgaggaggaggatatgaaagaggcattcaatgtgtttgatcaaaatgg |
139 |
Q |
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| T |
25393557 |
gacgagtttggtgagttatatcaatccatcatggacgaaaaagatgaagaggaagacatgagggaagctttcaatgtctttgatcaaaatgg |
25393648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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