View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0954_low_39 (Length: 213)
Name: NF0954_low_39
Description: NF0954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0954_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 11764092 - 11763909
Alignment:
| Q |
1 |
taaactgaaactgttttcatataagttataaggtatttctataccgtattatgaagagcttataaaaataagttgaaaaataacttatgagcatgtcata |
100 |
Q |
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| T |
11764092 |
taaactgaaactgttttcatataagttataaggtatttccataccgtattatgaagtgcttataaaaataagttgaaaaataacttatgagcatgtcata |
11763993 |
T |
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| Q |
101 |
agttatttataccaatagattagttcaaataagtcaatttaaacagacacataatcttacctatgaaatctggaatgacacgtc |
184 |
Q |
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| T |
11763992 |
agttatttataccaatagattagttcaaataagtcaatttaaacagacacataatcttacctatgaaatctggaatgacacgtc |
11763909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 184
Target Start/End: Complemental strand, 11770224 - 11770165
Alignment:
| Q |
125 |
tcaaataagtcaatttaaacagacacataatcttacctatgaaatctggaatgacacgtc |
184 |
Q |
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| T |
11770224 |
tcaaataagtcagtccaaagatacacatattcttacctatgaaatctggaatgacacgtc |
11770165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 89
Target Start/End: Original strand, 5150961 - 5150999
Alignment:
| Q |
51 |
atgaagagcttataaaaataagttgaaaaataacttatg |
89 |
Q |
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| T |
5150961 |
atgaagagcttatagaaataagttgaaaaaaaacttatg |
5150999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 138
Target Start/End: Complemental strand, 30598237 - 30598203
Alignment:
| Q |
104 |
tatttataccaatagattagttcaaataagtcaat |
138 |
Q |
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| T |
30598237 |
tatttataccaatagataagttcaaataagtcaat |
30598203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 43529815 - 43529774
Alignment:
| Q |
107 |
ttataccaatagattagttcaaataagtcaatttaaacagac |
148 |
Q |
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| T |
43529815 |
ttataccaatagataagctcaaataagtcaattcaaacagac |
43529774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 35517018 - 35516978
Alignment:
| Q |
110 |
taccaatagattagttcaaataagtcaatttaaacagacac |
150 |
Q |
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| T |
35517018 |
taccaatagattagctcaaataagtcaatctaaacatacac |
35516978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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