View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0954_low_4 (Length: 539)
Name: NF0954_low_4
Description: NF0954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0954_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 30 - 535
Target Start/End: Complemental strand, 28296975 - 28296470
Alignment:
| Q |
30 |
cttccaacattagctttgtggaagaaactaaggaaaagttgtgccactaatgtattttctnnnnnnntgcttgactcaacaaaaaaccttcgccaacaaa |
129 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28296975 |
cttccaacattagctttatggaagaaactaaggaaaagttgtgccacaaatgtattttctaaaaaaatgcttgactcaacaaaaaaccttcgccaacaaa |
28296876 |
T |
|
| Q |
130 |
agttgcaagaattattggattatgtgaatgaaaaaagcaacaaaggtgaggtatttgatattggtgaggctgtttttaacagcgtacttaattcaatttc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
28296875 |
agttgcaagaattattggattatgtgaatgaaaaaagcaacaaaggtgaggtttttgatattggtgaggctgtttttaacactgttcttaattcaatttc |
28296776 |
T |
|
| Q |
230 |
aaacactttgttctctattgatttggctgattccaaacctgataaaaagtctcaagagtttgagaacattatttggagttacatggaagcagctggtagg |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28296775 |
aaacactttgttctctattgatttggctgattccaaacctgataaaaagtctcaagagtttgagaacattatttggagttacatggaagcagctggtagg |
28296676 |
T |
|
| Q |
330 |
cctaatgtttcagatttctttccaattcttcgtccttttgatccacaaggtgtgcatgcaaagatgaccaattgtataaaaaagttgtgtgatattttta |
429 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28296675 |
cctaatatttcagatttctttccaattcttcgtccttttgatccacaaggtgtgcatgcaaagatgaccaattgtataaaaaagttgtgtgatattttta |
28296576 |
T |
|
| Q |
430 |
atggaattattgaagaaagaatttgttcaagagcttccgatggtgattatgaggtgtgcaatgatgtgttagattcacttcttaatagcaacaatattat |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28296575 |
atggaattattgaagaaagaatttgttcaagagcttccaatggtgattttgaggtgttcaatgatgtgttggattcacttcttaatagcaacaatattat |
28296476 |
T |
|
| Q |
530 |
tggaga |
535 |
Q |
| |
|
|||||| |
|
|
| T |
28296475 |
tggaga |
28296470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 28 - 514
Target Start/End: Complemental strand, 28331518 - 28331032
Alignment:
| Q |
28 |
cacttccaacattagctttgtggaagaaactaaggaaaagttgtgccactaatgtattttctnnnnnnntgcttgactcaacaaaaaaccttcgccaaca |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| || | ||||||||| |||||||||||||||||| |||||| ||||| |
|
|
| T |
28331518 |
cacttccaacattagctttgtggaagaaactaaggaaaatttgtgctacacaagtattttctacaaaaatgcttgactcaacaaaaatccttcgtcaaca |
28331419 |
T |
|
| Q |
128 |
aaagttgcaagaattattggattatgtgaatgaaaaaagcaacaaaggtgaggtatttgatattggtgaggctgtttttaacagcgtacttaattcaatt |
227 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
28331418 |
aaagttgcaagaattattagattatgtgaatgaaaaaagcaacaaaggagaggtttttgatattggtgaggctgtttttaacactgttcttaattcaatt |
28331319 |
T |
|
| Q |
228 |
tcaaacactttgttctctattgatttggctgattccaaacctgataaaaagtctcaagagtttgagaacattatttggagttacatggaagcagctggta |
327 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||| ||| ||| ||||||||||||||||| |||| |||||| |||||| |||||||| |||||||| |
|
|
| T |
28331318 |
tcaaatactttgttctctattgatttggctcattccacacccgatgaaaagtctcaagagtttaagaaaattattgggagtttcatggaagaagctggta |
28331219 |
T |
|
| Q |
328 |
ggcctaatgtttcagatttctttccaattcttcgtccttttgatccacaaggtgtgcatgcaaagatgaccaattgtataaaaaagttgtgtgatatttt |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || || || ||||| ||||||||||| |
|
|
| T |
28331218 |
agcctaatgtttcagatttctttccaattcttcgtccctttgatccacaaggtgtgcatgcaaagatgaccagttacatgaagaagttatgtgatatttt |
28331119 |
T |
|
| Q |
428 |
taatggaattattgaagaaagaatttgttcaagagcttccgatggtgattatgaggtgtgcaatgatgtgttagattcacttcttaa |
514 |
Q |
| |
|
| |||||||||||||| |||||||| |||||||| ||||| | | |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28331118 |
tgatggaattattgaaaaaagaattagttcaagatcttccaaagttgattatgtggtgtgcaatgatgtgttagattcacttcttaa |
28331032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 31 - 516
Target Start/End: Complemental strand, 28321036 - 28320551
Alignment:
| Q |
31 |
ttccaacattagctttgtggaagaaactaaggaaaagttgtgccactaatgtattttctnnnnnnntgcttgactcaacaaaaaaccttcgccaacaaaa |
130 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| || || ||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
28321036 |
ttccaacattaaatttgtggaagaaactaaggaaaagttgtgctacaaaagtattttctacaaaaatgcttgactcaacaagaaaccttcgccaacaaaa |
28320937 |
T |
|
| Q |
131 |
gttgcaagaattattggattatgtgaatgaaaaaagcaacaaaggtgaggtatttgatattggtgaggctgtttttaacagcgtacttaattcaatttca |
230 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||| | || ||||||||||||||| |
|
|
| T |
28320936 |
gttgcaagaattattagattatgtgaatgaaaaaagtaacaaaggtgaggtttttgatattggtgaagctgtttttacaaatgtccttaattcaatttca |
28320837 |
T |
|
| Q |
231 |
aacactttgttctctattgatttggctgattccaaa---cctgataaaaagtctcaagagtttgagaacattatttggagttacatggaagcagctggta |
327 |
Q |
| |
|
||||||||||||||||| |||||||| |||||| | |||||| | ||||||||||| ||| ||| |||||||||| || |||||||| |||||||| |
|
|
| T |
28320836 |
aacactttgttctctatggatttggcacattccacagtacctgatgagaagtctcaagaatttaagaccattatttggggtatcatggaagaagctggta |
28320737 |
T |
|
| Q |
328 |
ggcctaatgtttcagatttctttccaattcttcgtccttttgatccacaaggtgtgcatgcaaagatgaccaattgtataaaaaagttgtgtgatatttt |
427 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| || |||||||||||| || |||||| |||||||||| ||| || ||||||||||| ||||| |
|
|
| T |
28320736 |
agcctaatatttcagatttctttccaattcttcgtcccttagatccacaaggtttgtatgcaaggatgaccaatcatatgaagaagttgtgtgagatttt |
28320637 |
T |
|
| Q |
428 |
taatggaattattgaagaaagaatttgttcaagagcttccgatggtgattatgaggtgtgcaatgatgtgttagattcacttcttaata |
516 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||| | ||| | | || |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28320636 |
tgatggaattattgaagaaagaattcgttcaagatcctccaaagttg---ttgaggtttgcaatgatgtgttagattcacttcttaata |
28320551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 30 - 515
Target Start/End: Complemental strand, 28310463 - 28309978
Alignment:
| Q |
30 |
cttccaacattagctttgtggaagaaactaaggaaaagttgtgccactaatgtattttctnnnnnnntgcttgactcaacaaaaaaccttcgccaacaaa |
129 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||| || || ||||||||| | |||||||||||||||| |||||||||||||| |
|
|
| T |
28310463 |
cttccaacattagcttcatggaagaaactaaggaaattttgtgctacaaaagtattttctacaaaagtacttgactcaacaaaaatccttcgccaacaaa |
28310364 |
T |
|
| Q |
130 |
agttgcaagaattattggattatgtgaatgaaaaaagcaacaaaggtgaggtatttgatattggtgaggctgtttttaacagcgtacttaattcaatttc |
229 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| || ||||||||| | ||||||||||||| ||||||||||| | | |||||||||||||| |
|
|
| T |
28310363 |
agttgcaagaattattagattatgtgaatgaaaaaagtaagaaaggtgagatttttgatattggtgcggctgtttttacaactatccttaattcaatttc |
28310264 |
T |
|
| Q |
230 |
aaacactttgttctctattgatttggctgattccaaacctgataaaaagtctcaagagtttgagaacattatttggagttacatggaagcagctggtagg |
329 |
Q |
| |
|
||||||||||| ||||| ||||||||| |||| | ||||||| ||||||||||||| ||| ||||| |||| ||| || |||||||| |||||||| | |
|
|
| T |
28310263 |
aaacactttgtgttctatggatttggctcattcaacacctgatgaaaagtctcaagaatttaagaacgttatgtggggtatcatggaagaagctggtaag |
28310164 |
T |
|
| Q |
330 |
cctaatgtttcagatttctttccaattcttcgtccttttgatccacaaggtgtgcatgcaaagatgaccaattgtataaaaaagttgtgtgatattttta |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | | || |||| ||| |||||| ||| |||||||||||||| |||||| |
|
|
| T |
28310163 |
cctaatgtttcagatttctttccaattcttcgtccttttgatccacaaagaatacacgcaaggattaccaatcatatgaaaaagttgtgtgagatttttg |
28310064 |
T |
|
| Q |
430 |
atggaattattgaagaaagaatttgttcaagagcttccgatggtgattatgaggtgtgcaatgatgtgttagattcacttcttaat |
515 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||| |||| || ||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28310063 |
atggaataattgaagaaagaattagttcaagagattccaattctgattctaaggtgtgcaatgatgtgttagattcacttcttaat |
28309978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 126 - 527
Target Start/End: Complemental strand, 28304765 - 28304368
Alignment:
| Q |
126 |
caaaagttgcaagaatta-ttggattatgtgaatgaaaaaagcaacaaaggtgaggtatttgatattggtgaggctgtttttaacagcgtactt-aattc |
223 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| |||||| || |||||||||| || |||||||||||||| |||||||||| || | | ||| ||||| |
|
|
| T |
28304765 |
caaaagttaaaagaattaattggattatgtgaaagaaaaaggctacaaaggtgaagtttttgatattggtgatgctgttttta-caactttctttaattc |
28304667 |
T |
|
| Q |
224 |
aatttcaaacactttgttctctattgatttggctgattccaaacctgataaaaagtctcaagagtttgagaacattatttggagttacatggaagcagct |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| | || |||| |||||| |||||||||| |||||||||||| || ||||||| |||| |
|
|
| T |
28304666 |
aatttcaaacactttgttctctattgatttggctcatttaacacatgat--gaagtctaaagagtttgaaaacattatttggggtatcatggaaaaagct |
28304569 |
T |
|
| Q |
324 |
ggtaggcctaatgtttcagatttctttccaattcttcgtccttttgatccacaaggtgtgcatgcaaagatgaccaattgtataaaaaagttgtgtgata |
423 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || || || ||||| ||||||| |
|
|
| T |
28304568 |
ggtaagcctaatgtttcagatttctttccaattcttcgtccctttgatccacaaggtgtgcatgcaaagatgaccagttacatgaagaagttatgtgata |
28304469 |
T |
|
| Q |
424 |
tttttaatggaattattgaagaaagaatttgttcaagagcttccgatggtgattatgaggtgtgcaatgatgtgttagattcacttcttaatagcaacaa |
523 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| | | || ||||||| |||||||||| ||||||||||||||| |||| |||||| |
|
|
| T |
28304468 |
ttttttatggaattattgaagaaagaatttgttcaagagcttccaaagctg---atgaggtttgcaatgatgggttagattcacttctcaataacaacaa |
28304372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 30 - 299
Target Start/End: Original strand, 28288238 - 28288507
Alignment:
| Q |
30 |
cttccaacattagctttgtggaagaaactaaggaaaagttgtgccactaatgtattttctnnnnnnntgcttgactcaacaaaaaaccttcgccaacaaa |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| || || ||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
28288238 |
cttccaacattagctttgtggaagaaactaaggaaaatttgtgctacaaaagtattttctacaaaaatgcttgactcaacaaaaaacattcgccaacaaa |
28288337 |
T |
|
| Q |
130 |
agttgcaagaattattggattatgtgaatgaaaaaagcaacaaaggtgaggtatttgatattggtgaggctgtttttaacagcgtacttaattcaatttc |
229 |
Q |
| |
|
|||| |||| ||||||||||||||| || |||||| ||||||||||||| | ||||||||||||||||||||||||| | || ||||||||| |||| |
|
|
| T |
28288338 |
agttacaagtattattggattatgtaaaggaaaaatgcaacaaaggtgaagcttttgatattggtgaggctgtttttacaactgtccttaattcagtttc |
28288437 |
T |
|
| Q |
230 |
aaacactttgttctctattgatttggctgattccaaacctgataaaaagtctcaagagtttgagaacatt |
299 |
Q |
| |
|
||||||||| |||||||| ||||||||| |||| | ||||||| |||| ||||||| ||||||||||||| |
|
|
| T |
28288438 |
aaacactttcttctctatggatttggctcattcaacacctgatgaaaaatctcaagtgtttgagaacatt |
28288507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 204
Target Start/End: Complemental strand, 28336392 - 28336317
Alignment:
| Q |
129 |
aagttgcaagaattattggattatgtgaatgaaaaaagcaacaaaggtgaggtatttgatattggtgaggctgttt |
204 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||| |||||||||| || || |||||||| |||| ||||| |
|
|
| T |
28336392 |
aagttgcaagaattattggattacgtgaatggaaaattttacaaaggtgatgttttagatattggcgaggttgttt |
28336317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 395
Target Start/End: Original strand, 28288550 - 28288603
Alignment:
| Q |
342 |
gatttctttccaattcttcgtccttttgatccacaaggtgtgcatgcaaagatg |
395 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||| | || ||||||||||| |
|
|
| T |
28288550 |
gatttctttccaattcttcgtcctttagacccacaacgattgtatgcaaagatg |
28288603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University