View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0954_low_40 (Length: 211)
Name: NF0954_low_40
Description: NF0954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0954_low_40 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 89 - 211
Target Start/End: Original strand, 5979903 - 5980025
Alignment:
| Q |
89 |
atgaatgaatatatgtaccttaaaatttaagtaatttatttttattattttggtcgaaccgacaccaattaggtcactgtctcggccgtaagaatgctaa |
188 |
Q |
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| T |
5979903 |
atgaatgaatatatgtaccttaaaatttaagtaatttatttttattattttggtcgaaccgacaccaattaggtcaccgtctcggccgtaaaaatgctaa |
5980002 |
T |
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| Q |
189 |
agaccataaacttctaccgttaa |
211 |
Q |
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| T |
5980003 |
agaccataaacttctaccgttaa |
5980025 |
T |
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