View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0954_low_5 (Length: 525)
Name: NF0954_low_5
Description: NF0954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0954_low_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 28 - 525
Target Start/End: Original strand, 1883228 - 1883729
Alignment:
| Q |
28 |
cacctccaacaattttttgttctatgttttaacaagaaaccgacaattctttaagataacttaaaatacttccaaccat-----tccatgtgtttcttcc |
122 |
Q |
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| T |
1883228 |
cacctccaacaattttttgttctatgttttaacaagaaaccgacaattctttaagataacttaaaatacttccaaccattccattccatgtgtttcttcc |
1883327 |
T |
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| Q |
123 |
tattttcactcaattttatatatttttggttttgattcttagttaaagctactttccttttagaacagtacattctgtgtgaatctagttttatccatcc |
222 |
Q |
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| T |
1883328 |
tattttcactcaattttatatatttttggttttgattcttagttaaagctactttccttttagaacagtacattctgtgtgaatctagttttatccatcc |
1883427 |
T |
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| Q |
223 |
aacatgtgggaatctgagagtgattcaactgcaagacacaaatatggagatggaattctcacttcaaacaaacatggtgtcaagactgaaggatttcttc |
322 |
Q |
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| T |
1883428 |
aacatgtgggaatctgagagtgattcaactgcaagacacaaatatggagatggaattctcacttcaaacaaacatggtgtcaagactgaaggatttcttc |
1883527 |
T |
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| Q |
323 |
aaagaggtcactcttggtatgtttattaaaatagtttagtattctttgaaaatgattttaagaatctagtatttttgaatgatgtcatttaatatatgct |
422 |
Q |
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| T |
1883528 |
aaagaggtcactcttggtatgtttattaaaatagtttagtattctttg-aaatgattttaagaatctagtatttttgaatgatgtcatttaatatatgct |
1883626 |
T |
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| Q |
423 |
taaaaatctagtattattttaatgcaggtatgttgcaactgatgttccaagtgattttcttgttcaaattggtgaagctaacttccacttgcataaggta |
522 |
Q |
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| T |
1883627 |
taaaaatctagtattattttaatgcaggtatgttgcaactgatgttccaagtgattttcttgttcaaattggtgaagctaacttccacttgcataaggta |
1883726 |
T |
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| Q |
523 |
cct |
525 |
Q |
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| T |
1883727 |
cct |
1883729 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 263 - 345
Target Start/End: Complemental strand, 37215868 - 37215786
Alignment:
| Q |
263 |
aatatggagatggaattctcacttcaaacaaacatggtgtcaagactgaaggatttcttcaaagaggtcactcttggtatgtt |
345 |
Q |
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| T |
37215868 |
aatatggaggtggagttctcacctcaaccaaacatggtgttaagattgaaggttttcatcaaagaggcaactcatggtatgtt |
37215786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 522
Target Start/End: Complemental strand, 37215661 - 37215583
Alignment:
| Q |
444 |
atgcaggtatgttgcaactgatgttccaagtgattttcttgttcaaattggtgaagctaacttccacttgcataaggta |
522 |
Q |
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||||||||||||| || ||||| ||||||||||| ||| || |||||||| ||||| | |||||||||||| |||||| |
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| T |
37215661 |
atgcaggtatgtttcagctgatattccaagtgatcttcaagtccaaattggagaagccagcttccacttgcacaaggta |
37215583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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