View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0954_low_7 (Length: 512)

Name: NF0954_low_7
Description: NF0954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0954_low_7
NF0954_low_7
[»] chr1 (8 HSPs)
chr1 (21-512)||(26443897-26444389)
chr1 (343-480)||(4379863-4380000)
chr1 (392-480)||(9509225-9509313)
chr1 (410-480)||(18793275-18793345)
chr1 (362-482)||(51234491-51234612)
chr1 (361-453)||(26016313-26016405)
chr1 (78-150)||(35829740-35829812)
chr1 (345-465)||(52442806-52442926)
[»] chr5 (9 HSPs)
chr5 (16-477)||(22834853-22835295)
chr5 (178-398)||(18132101-18132324)
chr5 (178-408)||(43522305-43522538)
chr5 (343-480)||(21952209-21952346)
chr5 (52-107)||(43522173-43522228)
chr5 (33-107)||(18132401-18132477)
chr5 (408-482)||(32516481-32516555)
chr5 (391-478)||(36123487-36123574)
chr5 (450-504)||(18132001-18132057)
[»] chr7 (5 HSPs)
chr7 (372-446)||(36514526-36514600)
chr7 (361-434)||(23720726-23720799)
chr7 (374-497)||(30200231-30200352)
chr7 (424-480)||(27021993-27022049)
chr7 (396-452)||(34869331-34869387)
[»] chr6 (2 HSPs)
chr6 (371-413)||(18905772-18905814)
chr6 (397-478)||(546911-546992)
[»] chr4 (10 HSPs)
chr4 (396-440)||(34233360-34233404)
chr4 (361-440)||(44860730-44860809)
chr4 (395-478)||(43070053-43070136)
chr4 (417-495)||(25257851-25257929)
chr4 (372-433)||(1427597-1427658)
chr4 (361-430)||(10775759-10775828)
chr4 (343-440)||(27991742-27991839)
chr4 (391-452)||(33709825-33709886)
chr4 (410-466)||(18499798-18499854)
chr4 (373-473)||(40933190-40933290)
[»] chr3 (8 HSPs)
chr3 (377-433)||(49841503-49841559)
chr3 (78-149)||(48252510-48252580)
chr3 (376-448)||(46367702-46367776)
chr3 (414-473)||(48777509-48777568)
chr3 (361-467)||(25191255-25191361)
chr3 (374-440)||(46568005-46568071)
chr3 (374-434)||(29919193-29919253)
chr3 (374-434)||(29968346-29968406)
[»] chr8 (4 HSPs)
chr8 (367-440)||(42493631-42493704)
chr8 (406-496)||(39051063-39051155)
chr8 (372-453)||(39953578-39953659)
chr8 (396-452)||(36545058-36545114)
[»] chr2 (7 HSPs)
chr2 (415-482)||(9578986-9579053)
chr2 (396-467)||(24583906-24583977)
chr2 (372-466)||(23714559-23714653)
chr2 (372-466)||(24102231-24102325)
chr2 (398-479)||(9556656-9556737)
chr2 (396-452)||(3865983-3866039)
chr2 (396-452)||(8180691-8180747)


Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 21 - 512
Target Start/End: Original strand, 26443897 - 26444389
Alignment:
Q  21 actaaagaagtgttcaaattgatgagtagg-caatgcatttggaccagaccacacgcatattgaagtgtggaaatgtcttggagatatacgcattggatg 119  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26443897 actaaagaagtgttcaaattgatgagtagggcaatgcacttggaccagaccactcgcatattgaagtgtggaaatgtcttggagatatacgcattggatg 26443996  T
Q  120 gatcaccaaatttattaacaaatttatgaggtcaaacaaaagttttgtgnnnnnnnnntgcaagaatcactttaattccgacttataagaacaatatcaa 219  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||    
T  26443997 gatcaccaaacttatgaacaaatttatgaggtcaaacaaaagttttgtgaaaaaaaaatgcaagaatcactttaattccgacttataagaacaatatcaa 26444096  T
Q  220 tacaaaactttcattgatatacgaaattgtgcaaattattgggtgattaaaattacgagtcatgccaaaaagttatgaaaaaggttaatcaaacgaagat 319  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| | |  |||||||||||||||||||||||||||||||    
T  26444097 tacaaacctttcattgatatacgaaattgtgcaaattattggatgattaaaattatgagtcatactatgaagttatgaaaaaggttaatcaaacgaagat 26444196  T
Q  320 taagaaaatagattaaagttattgatgttgtactggacatggtgttgggctctaaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgt 419  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||  ||||    
T  26444197 taagaaaatagattaaagttattgatgttgtactagacatggtgctgggctctaaagaaccaacccggaattaaattaagtgtagtatagatgagaatgt 26444296  T
Q  420 tgtgttggatgtgtgataagaataaacatgatatgactaaaaatgacaatattaaagagagttaagataacacctatattatctacaaaggat 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26444297 tgtgttggatgtgtgataagaataaacatgatatgactaaaaatgacaatattaaagagagttaagataacacctataatatctacaaaggat 26444389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 480
Target Start/End: Original strand, 4379863 - 4380000
Alignment:
Q  343 gatgttgtactggacatggtgttgggctctaaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaat 442  Q
    |||||||||| |||||  ||||| |||  |||||||||||| ||||| ||||| |||  |||   |||||| |||||||||||||||||||| ||||| |    
T  4379863 gatgttgtacgggacagagtgttaggcagtaaagaaccaacacgaaaataaataaagcttagctgagatgaggatgttgtgttggatgtgtggtaagact 4379962  T
Q  443 aaacatgatatgactaaaaatgacaatattaaagagag 480  Q
    | | | ||||||| || ||||||||| |||| ||||||    
T  4379963 agaaaagatatgattagaaatgacaacattagagagag 4380000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 480
Target Start/End: Original strand, 9509225 - 9509313
Alignment:
Q  392 aaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgacaatattaaagagag 480  Q
    |||||||| |||| | |||||| |||||||||||||||| ||||||||| || ||| ||||||| || ||||||||  |||| ||||||    
T  9509225 aaattaagcgtagcagagatgaggatgttgtgttggatgagtgataagactagacaggatatgattagaaatgacaccattagagagag 9509313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 480
Target Start/End: Complemental strand, 18793345 - 18793275
Alignment:
Q  410 atgatgatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgacaatattaaagagag 480  Q
    |||||||||||| ||||||||||||  |||| || ||| ||||  |||||||||||| | |||||||||||    
T  18793345 atgatgatgttgcgttggatgtgtggaaagactagacaggatagaactaaaaatgacgacattaaagagag 18793275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 482
Target Start/End: Original strand, 51234491 - 51234612
Alignment:
Q  362 tgttgggctctaaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaat-aaacatgatatgactaaa 460  Q
    ||||||||  |||||||||||| || || |||| || | |||   ||||||| |||||||||||||| ||||| ||||| | |||||||||| || || |    
T  51234491 tgttgggcagtaaagaaccaacacgcaaataaaataggcgtaaggtagatgaggatgttgtgttggacgtgtggtaagactaaaacatgataggattaga 51234590  T
Q  461 aatgacaatattaaagagagtt 482  Q
    ||| |||| |||| ||||||||    
T  51234591 aattacaacattagagagagtt 51234612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 453
Target Start/End: Original strand, 26016313 - 26016405
Alignment:
Q  361 gtgttgggctctaaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgatat 453  Q
    |||||||||  ||||||||||||  |||  |||| |||| |||| | |||||| ||||||| |||||||||||| ||||| || ||| |||||    
T  26016313 gtgttgggcggtaaagaaccaacaagaacataaagtaagcgtagcagagatgaggatgttgcgttggatgtgtggtaagactagacaggatat 26016405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 35829812 - 35829740
Alignment:
Q  78 tattgaagtgtggaaatgtcttggagatatacgcattggatggatcaccaaatttattaacaaatttatgagg 150  Q
    |||||||||||||||| ||||||||| || | |||||   ||| ||||||||||| ||||| || ||||||||    
T  35829812 tattgaagtgtggaaaagtcttggagttaaaggcatttagtggctcaccaaattttttaacgaaattatgagg 35829740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 345 - 465
Target Start/End: Complemental strand, 52442926 - 52442806
Alignment:
Q  345 tgttgtactggacatggtgttgggctctaaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataa 444  Q
    |||||||| |||||| ||||| ||   ||| ||| |||| | ||| ||||||||| |||| | | |||| |||||||||||||||||||| ||||| ||     
T  52442926 tgttgtacgggacatagtgtttggtggtaatgaaacaacacaaaaataaattaagcgtagcagacatgaggatgttgtgttggatgtgtggtaagactag 52442827  T
Q  445 acatgatatgactaaaaatga 465  Q
    ||| |||| || || ||||||    
T  52442826 acaagataagattagaaatga 52442806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 5e-57; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 16 - 477
Target Start/End: Original strand, 22834853 - 22835295
Alignment:
Q  16 atgagactaaagaagtgttcaaattgatgagtaggca--atgcatttggaccagaccacacgcatattgaagtgtggaaatgtcttggagatatacgcat 113  Q
    |||| ||||||||||||||||||||| |||||| | |  || || ||||||||||| |||  |||||| ||| |||||||| ||||||||||||| ||||    
T  22834853 atgaaactaaagaagtgttcaaattggtgagtaaggataattcagttggaccagacaacatacatatttaagagtggaaatttcttggagatataggcat 22834952  T
Q  114 tggatggatcaccaaatttattaacaaatttatgaggtcaaacaaaagttttgtgnnnnnnnnntgcaagaatcactttaattccgacttataagaacaa 213  Q
    ||| | |||||||||| |||||||||||||||||||||||| |||||||||||           ||||||||||||||||||||| || |||||||||||    
T  22834953 tgggtagatcaccaaacttattaacaaatttatgaggtcaatcaaaagttttg----gatgtgttgcaagaatcactttaattccaacctataagaacaa 22835048  T
Q  214 tatcaat--acaaaactttcattgatatacgaaattgtgcaaattattgggtgattaaaattacgagtcatgccaaaaagttatgaaaaaggttaatcaa 311  Q
    |||  ||  ||||| |||| |  ||| ||| ||||| ||||| |||||||  |||||||||||  | |||| |||  ||||||||  ||||| |||| ||    
T  22835049 tatggatacacaaacctttaaaagatttacaaaattatgcaagttattggaggattaaaattattattcataccatgaagttatg--aaaggctaattaa 22835146  T
Q  312 acgaaga-ttaagaaaatagattaaagttattgatgttgtactggacatggtgttgggctctaaagaaccaacccgaaattaaattaagtgtagtataga 410  Q
    ||||||| ||||||||||| | |||||||||||||| |||||| |                  ||||||||||||||||||||| ||||||| ||| |||    
T  22835147 acgaagatttaagaaaatatactaaagttattgatggtgtactag------------------aagaaccaacccgaaattaaactaagtgtggtaaaga 22835228  T
Q  411 tgatgatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgacaatattaaaga 477  Q
    ||| || ||||||||| | ||||||||| | ||||| ||||||||||| ||||||||||||||||||    
T  22835229 tgaagaggttgtgttgaaagtgtgataaaactaaacgtgatatgactagaaatgacaatattaaaga 22835295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 178 - 398
Target Start/End: Complemental strand, 18132324 - 18132101
Alignment:
Q  178 tgcaagaatcactttaattccgacttataagaacaatatcaa--tacaaaactttcattgatatacgaaattgtgcaaattattgggtgattaaaattac 275  Q
    ||||||||||| |||||||||||| |||||| ||| ||   |  |||||| ||||||  ||||||| || || |||||||||||||  |||| ||||||     
T  18132324 tgcaagaatcattttaattccgacctataagtacactagggacatacaaacctttcaaagatatacaaagttatgcaaattattggaggattcaaattat 18132225  T
Q  276 gagtcatgccaaaaagttatgaaaaaggttaatcaaacgaagattaagaaaatagattaaagttattgatg-ttgtactggacatggtgttgggctctaa 374  Q
     |||||| |||  ||||||||||||||| |||||||| |||||||||||||| ||| |||||| | | ||| ||||||| || |||||||||||||||||    
T  18132224 aagtcataccatgaagttatgaaaaaggctaatcaaaggaagattaagaaaagagactaaagtaacttatgtttgtactagatatggtgttgggctctaa 18132125  T
Q  375 agaaccaacccgaaattaaattaa 398  Q
    ||||||||||| ||||||||||||    
T  18132124 agaaccaacccaaaattaaattaa 18132101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 178 - 408
Target Start/End: Original strand, 43522305 - 43522538
Alignment:
Q  178 tgcaagaatcactttaattccgacttataagaacaatatcaa--tacaaaactttcattgatatacgaaattgtgcaaattattgggtgattaaaattac 275  Q
    ||||||||||| |||||||||||| |||||| ||| ||   |  |||||| ||||||  ||||||| || || ||||| |||||||  |||| ||||||     
T  43522305 tgcaagaatcattttaattccgacctataagtacactagggacatacaaacctttcaaagatatacaaagttatgcaacttattggaggattcaaattat 43522404  T
Q  276 gagtcatgccaaaaagttatgaaaaaggttaatcaaacgaagattaagaaaatagattaaagttattgatgtt-gtactggacatggtgttgggctctaa 374  Q
     ||||||  ||  ||||||||||||||| |||| ||| |||||||||||||| ||| |||||| | | ||||| ||||| || |||||||||||||||||    
T  43522405 aagtcatatcatgaagttatgaaaaaggctaatgaaaggaagattaagaaaagagactaaagtaacttatgtttgtactagatatggtgttgggctctaa 43522504  T
Q  375 agaaccaacccgaaattaaattaagtgtagtata 408  Q
    ||||||||||| |||||||||||| |||||||||    
T  43522505 agaaccaacccaaaattaaattaaatgtagtata 43522538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 343 - 480
Target Start/End: Original strand, 21952209 - 21952346
Alignment:
Q  343 gatgttgtactggacatggtgttgggctctaaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaat 442  Q
    |||| ||||| |||||  ||||||||| || |||||||||| |||| ||||||||||||||| | |||||| ||||||| |||| ||||||| ||||| |    
T  21952209 gatgctgtacgggacaaagtgttgggcgcttaagaaccaacacgaacttaaattaagtgtagaaaagatgaggatgttgcgttgcatgtgtggtaagact 21952308  T
Q  443 aaacatgatatgactaaaaatgacaatattaaagagag 480  Q
    | ||  |||| || || ||||||||  |||||||||||    
T  21952309 agacgagataagattagaaatgacagcattaaagagag 21952346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 52 - 107
Target Start/End: Original strand, 43522173 - 43522228
Alignment:
Q  52 aatgcatttggaccagaccacacgcatattgaagtgtggaaatgtcttggagatat 107  Q
    |||||| ||||||||||| |||  || |||||||||||||||||||||||||||||    
T  43522173 aatgcaattggaccagacaacatacagattgaagtgtggaaatgtcttggagatat 43522228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 18132477 - 18132401
Alignment:
Q  33 ttcaaattgatgagta--ggcaatgcatttggaccagaccacacgcatattgaagtgtggaaatgtcttggagatat 107  Q
    ||||||||| ||||||  || |||||| |||||| |||| |||  || |||||||||||||||||||||||||||||    
T  18132477 ttcaaattgttgagtaagggaaatgcaattggacgagacaacatacagattgaagtgtggaaatgtcttggagatat 18132401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 482
Target Start/End: Original strand, 32516481 - 32516555
Alignment:
Q  408 agatgatgatgttgtgttggatgtgtgataagaataaacatgatatgac-taaaaatgacaatattaaagagagtt 482  Q
    ||||||||||||||||||||||||||| ||||| || ||| |||| ||| || ||||||||| |||| ||||||||    
T  32516481 agatgatgatgttgtgttggatgtgtggtaagactagacaggata-gacttagaaatgacaacattagagagagtt 32516555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 478
Target Start/End: Complemental strand, 36123574 - 36123487
Alignment:
Q  391 taaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgacaatattaaagag 478  Q
    |||| |||| |||| | |||||| |||||||||||||||||||  ||| | ||||||||||   | ||||||||||||||||| ||||    
T  36123574 taaaataagcgtagcagagatgaagatgttgtgttggatgtgttgtaaaactaaacatgatggaattaaaaatgacaatattagagag 36123487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 504
Target Start/End: Complemental strand, 18132057 - 18132001
Alignment:
Q  450 atatgactaaaaatgacaatatt--aaagagagttaagataacacctatattatcta 504  Q
    ||||||||| |||||||||||||  | |||||||||||||||||| |||| ||||||    
T  18132057 atatgactagaaatgacaatatttaagagagagttaagataacacatataatatcta 18132001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 372 - 446
Target Start/End: Complemental strand, 36514600 - 36514526
Alignment:
Q  372 taaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaac 446  Q
    |||||||||||| ||||| |||||||||||||| | |||||| ||||||| |||||||||||| ||||| |||||    
T  36514600 taaagaaccaacacgaaaataaattaagtgtagcagagatgaggatgttgcgttggatgtgtggtaagactaaac 36514526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 434
Target Start/End: Original strand, 23720726 - 23720799
Alignment:
Q  361 gtgttgggctctaaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtg 434  Q
    |||||||||| |||||||||||| || |  ||||| |||||||||| ||||||  |||||||||||||||||||    
T  23720726 gtgttgggctttaaagaaccaacacggatataaatgaagtgtagtagagatgagaatgttgtgttggatgtgtg 23720799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 497
Target Start/End: Complemental strand, 30200352 - 30200231
Alignment:
Q  374 aagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgacaatatta 473  Q
    ||||||||||  | || |||| ||||||||| | |||||| |||||||||||||||||||| ||||| || |   ||||||| || ||||||||| |||     
T  30200352 aagaaccaacttggaaataaactaagtgtagcagagatgaggatgttgtgttggatgtgtggtaagattagatgggatatgattagaaatgacaacatt- 30200254  T
Q  474 aagagagttaagataacacctata 497  Q
     ||||||||| | |||||||||||    
T  30200253 -agagagttagggtaacacctata 30200231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 480
Target Start/End: Complemental strand, 27022049 - 27021993
Alignment:
Q  424 ttggatgtgtgataagaataaacatgatatgactaaaaatgacaatattaaagagag 480  Q
    ||||||||||||||||| || ||| |||| || |||||||||||| |||| ||||||    
T  27022049 ttggatgtgtgataagactagacaggataggattaaaaatgacaacattagagagag 27021993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 452
Target Start/End: Original strand, 34869331 - 34869387
Alignment:
Q  396 taagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgata 452  Q
    ||||||||||| |||||| ||||||| |||||||| ||| ||||| || ||||||||    
T  34869331 taagtgtagtagagatgaggatgttgcgttggatgagtggtaagactagacatgata 34869387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 371 - 413
Target Start/End: Original strand, 18905772 - 18905814
Alignment:
Q  371 ctaaagaaccaacccgaaattaaattaagtgtagtatagatga 413  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18905772 ctaaagaaccaacccgaaattaaattaagtgtagtatagatga 18905814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 478
Target Start/End: Original strand, 546911 - 546992
Alignment:
Q  397 aagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgacaatattaaagag 478  Q
    |||||||||| | || | ||||||| |||||||||||||||| | || | | ||||||| |||||||||| |||||| ||||    
T  546911 aagtgtagtaaaaataaggatgttgcgttggatgtgtgataaaactagataagatatgattaaaaatgaccatattagagag 546992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 440
Target Start/End: Complemental strand, 34233404 - 34233360
Alignment:
Q  396 taagtgtagtatagatgatgatgttgtgttggatgtgtgataaga 440  Q
    ||||||||||  |||||||||||||||||||||||||||||||||    
T  34233404 taagtgtagtggagatgatgatgttgtgttggatgtgtgataaga 34233360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 361 - 440
Target Start/End: Original strand, 44860730 - 44860809
Alignment:
Q  361 gtgttgggctctaaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataaga 440  Q
    |||||||||| | |||||||||   |||| |||||||||||||| | | |||| |||||||||||||||||||| |||||    
T  44860730 gtgttgggctgtgaagaaccaaggagaaaataaattaagtgtagcagaaatgaggatgttgtgttggatgtgtggtaaga 44860809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 478
Target Start/End: Complemental strand, 43070136 - 43070053
Alignment:
Q  395 ttaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgacaatattaaagag 478  Q
    |||||||||| | ||||||| |||||| |||||||||||| ||||| || ||| |||| || || ||||||||| |||| ||||    
T  43070136 ttaagtgtagcagagatgatcatgttgggttggatgtgtggtaagattagacaggataggattagaaatgacaacattagagag 43070053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 495
Target Start/End: Complemental strand, 25257929 - 25257851
Alignment:
Q  417 tgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgacaatattaaagagagttaagataacaccta 495  Q
    |||||||||||||||||  ||||| || ||||||||  | || ||||||||| |||| |||||||| || |||||||||    
T  25257929 tgttgtgttggatgtgtagtaagactagacatgatagaattagaaatgacaacattagagagagttgaggtaacaccta 25257851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 433
Target Start/End: Complemental strand, 1427658 - 1427597
Alignment:
Q  372 taaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgt 433  Q
    |||||||| |||  |||||| | |||||||||| ||||||||  ||||||||||||||||||    
T  1427658 taaagaactaacatgaaattgatttaagtgtagcatagatgagaatgttgtgttggatgtgt 1427597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 430
Target Start/End: Complemental strand, 10775828 - 10775759
Alignment:
Q  361 gtgttgggctctaaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatg 430  Q
    |||||||||  |||||||| ||  | ||| ||||||||| |||| | |||||||||||||||||||||||    
T  10775828 gtgttgggcggtaaagaactaatgcaaaaataaattaagcgtagcagagatgatgatgttgtgttggatg 10775759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 440
Target Start/End: Complemental strand, 27991839 - 27991742
Alignment:
Q  343 gatgttgtactggacatggtgttgggctctaaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataaga 440  Q
    |||||| ||| ||||| |||||| |||  | || ||||||| ||||  |||| ||||||||| | | |||| |||||||||||||||||||| |||||    
T  27991839 gatgttatacgggacagggtgttaggcagtgaataaccaacacgaacataaaataagtgtagcagaaatgaagatgttgtgttggatgtgtggtaaga 27991742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 452
Target Start/End: Original strand, 33709825 - 33709886
Alignment:
Q  391 taaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgata 452  Q
    |||||||||  ||| | |||||||||||||| |||||||||||| ||||| || ||||||||    
T  33709825 taaattaagcctagcagagatgatgatgttgcgttggatgtgtggtaagactagacatgata 33709886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 466
Target Start/End: Original strand, 18499798 - 18499854
Alignment:
Q  410 atgatgatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgac 466  Q
    |||| |||||||||||||||||||||||||| || ||  ||||  ||||||||||||    
T  18499798 atgaagatgttgtgttggatgtgtgataagactagacgagatagaactaaaaatgac 18499854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 473
Target Start/End: Complemental strand, 40933290 - 40933190
Alignment:
Q  373 aaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgacaatatt 472  Q
    ||||||||||| ||| | |||| |||||||||  ||||||| ||||||| |||| ||||||| |||||  | ||||||||  | || |||||| ||||||    
T  40933290 aaagaaccaacacgagagtaaaataagtgtagcgtagatgaggatgttgcgttgaatgtgtggtaagacaatacatgatagaattagaaatgaaaatatt 40933191  T
Q  473 a 473  Q
    |    
T  40933190 a 40933190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 433
Target Start/End: Original strand, 49841503 - 49841559
Alignment:
Q  377 aaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgt 433  Q
    |||||||  |||| |||||||||||||| |||||||| |||||||||||||||||||    
T  49841503 aaccaacaagaaaataaattaagtgtagcatagatgaggatgttgtgttggatgtgt 49841559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 149
Target Start/End: Original strand, 48252510 - 48252580
Alignment:
Q  78 tattgaagtgtggaaatgtcttggagatatacgcattggatggatcaccaaatttattaacaaatttatgag 149  Q
    |||||||||||||||| |||||||||||| | ||||||||||  ||||||||||| ||||| || |||||||    
T  48252510 tattgaagtgtggaaaggtcttggagataaaggcattggatgactcaccaaattt-ttaacgaaattatgag 48252580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 448
Target Start/End: Complemental strand, 46367776 - 46367702
Alignment:
Q  376 gaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttgg--atgtgtgataagaataaacat 448  Q
    |||||||| ||| | |||| ||||||||||| |||||| |||||||||||||  ||||||| ||||| |||||||    
T  46367776 gaaccaacacgagaataaaataagtgtagtagagatgaggatgttgtgttggatatgtgtggtaagactaaacat 46367702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 473
Target Start/End: Complemental strand, 48777568 - 48777509
Alignment:
Q  414 tgatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgacaatatta 473  Q
    ||||||||||||||||||||| ||||| ||||   ||||||| ||||||||| |||||||    
T  48777568 tgatgttgtgttggatgtgtggtaagactaaaagagatatgattaaaaatgaaaatatta 48777509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 467
Target Start/End: Original strand, 25191255 - 25191361
Alignment:
Q  361 gtgttgggctctaaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgatatgactaaa 460  Q
    |||||||||| | ||||  |||| ||| | |||| ||||||||| | |||||| ||||||| | |||||| ||| ||||| || ||||||||||| |||     
T  25191255 gtgttgggctgttaagagtcaacacgagagtaaagtaagtgtagcagagatgaggatgttgcgctggatgagtggtaagactagacatgatatgattaag 25191354  T
Q  461 aatgaca 467  Q
    |||||||    
T  25191355 aatgaca 25191361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 440
Target Start/End: Original strand, 46568005 - 46568071
Alignment:
Q  374 aagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataaga 440  Q
    |||||||| | ||||  ||| |||||||||| | |||||| |||||||||||||||||||| |||||    
T  46568005 aagaaccagcacgaacataagttaagtgtagcagagatgaggatgttgtgttggatgtgtgttaaga 46568071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 434
Target Start/End: Original strand, 29919193 - 29919253
Alignment:
Q  374 aagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtg 434  Q
    |||||||||| ||| | |||| | ||||||||  |||||| ||||||||||||||||||||    
T  29919193 aagaaccaacacgagaataaaatcagtgtagtggagatgacgatgttgtgttggatgtgtg 29919253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 434
Target Start/End: Original strand, 29968346 - 29968406
Alignment:
Q  374 aagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtg 434  Q
    |||||||||| ||| | |||| | ||||||||  |||||| ||||||||||||||||||||    
T  29968346 aagaaccaacacgagaataaaatcagtgtagtggagatgacgatgttgtgttggatgtgtg 29968406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 367 - 440
Target Start/End: Complemental strand, 42493704 - 42493631
Alignment:
Q  367 ggctctaaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataaga 440  Q
    |||| ||||||||||||  |||| |||||||||||||| | |||||| ||||||| ||||| |||||| |||||    
T  42493704 ggctgtaaagaaccaacaagaaaataaattaagtgtagcaaagatgaggatgttgcgttggttgtgtggtaaga 42493631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 496
Target Start/End: Original strand, 39051063 - 39051155
Alignment:
Q  406 atagatgatgatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgacaatatt--aaagagagttaagataacacctat 496  Q
    |||||||| ||||||||||| |||||||| |||||  | ||||||||  | || |||||||||||||  | ||||||||  ||||||||||||    
T  39051063 atagatgaggatgttgtgttagatgtgtggtaagacaagacatgatagaattagaaatgacaatattcgagagagagttgggataacacctat 39051155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 453
Target Start/End: Complemental strand, 39953659 - 39953578
Alignment:
Q  372 taaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgatat 453  Q
    |||||||||||| ||||  |||| | || |||| | ||||||  |||||| |||||||||||| ||||| ||||||||||||    
T  39953659 taaagaaccaacacgaacataaagttagcgtagcagagatgagaatgttgcgttggatgtgtggtaagattaaacatgatat 39953578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 452
Target Start/End: Original strand, 36545058 - 36545114
Alignment:
Q  396 taagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgata 452  Q
    ||||||||| | |||||| |||||||||||||||| ||| ||||| || ||||||||    
T  36545058 taagtgtagcagagatgaggatgttgtgttggatgagtggtaagactagacatgata 36545114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 482
Target Start/End: Complemental strand, 9579053 - 9578986
Alignment:
Q  415 gatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgacaatattaaagagagtt 482  Q
    ||||||| |||||||||||| |||||||| | ||||||  | ||||||||||||| ||| ||||||||    
T  9579053 gatgttgcgttggatgtgtggtaagaatagatatgatagaattaaaaatgacaatgttagagagagtt 9578986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 467
Target Start/End: Complemental strand, 24583977 - 24583906
Alignment:
Q  396 taagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgaca 467  Q
    ||||||||| | |||||| |||||||||  ||||| ||| ||||| |||||||||||||| ||| |||||||    
T  24583977 taagtgtagcagagatgaagatgttgtgcgggatgagtggtaagactaaacatgatatgattaagaatgaca 24583906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 466
Target Start/End: Complemental strand, 23714653 - 23714559
Alignment:
Q  372 taaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgac 466  Q
    |||||||||||| ||||| |||||||||  ||| | |||| |  ||||||||||||||||||| ||||| || |||  ||| || ||||||||||    
T  23714653 taaagaaccaacacgaaaataaattaagcatagcagagattagaatgttgtgttggatgtgtggtaagactagacaaaataggattaaaaatgac 23714559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 466
Target Start/End: Complemental strand, 24102325 - 24102231
Alignment:
Q  372 taaagaaccaacccgaaattaaattaagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgac 466  Q
    |||||||||||| ||||| |||||||||  ||| | |||| |  ||||||||||||||||||| ||||| || |||  ||| || ||||||||||    
T  24102325 taaagaaccaacacgaaaataaattaagcatagcagagattagaatgttgtgttggatgtgtggtaagactagacaaaataggattaaaaatgac 24102231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 479
Target Start/End: Complemental strand, 9556737 - 9556656
Alignment:
Q  398 agtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgatatgactaaaaatgacaatattaaagaga 479  Q
    ||||||||  || ||| |||||||||||||||||||| ||||| || ||  ||||||| || ||||||||| |||| |||||    
T  9556737 agtgtagtggagttgaggatgttgtgttggatgtgtggtaagattagacgggatatgattagaaatgacaacattagagaga 9556656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 452
Target Start/End: Original strand, 3865983 - 3866039
Alignment:
Q  396 taagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgata 452  Q
    ||||||||| | |||||||||||||| |||||||| ||| ||||| || ||||||||    
T  3865983 taagtgtagcagagatgatgatgttgcgttggatgagtggtaagactagacatgata 3866039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 452
Target Start/End: Original strand, 8180691 - 8180747
Alignment:
Q  396 taagtgtagtatagatgatgatgttgtgttggatgtgtgataagaataaacatgata 452  Q
    ||||||||| | |||||| |||||||||||||||| ||| ||||| || ||||||||    
T  8180691 taagtgtagcagagatgaggatgttgtgttggatgagtggtaagactagacatgata 8180747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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