View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0954_low_8 (Length: 504)
Name: NF0954_low_8
Description: NF0954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0954_low_8 |
 | |
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| [»] scaffold0256 (1 HSPs) |
| | |
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| [»] scaffold0184 (1 HSPs) |
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| [»] scaffold0078 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 29 - 494
Target Start/End: Complemental strand, 21550076 - 21549613
Alignment:
| Q |
29 |
actttacacatgccatgtttaataatctagactattaaacaggtttaaggaatttacgattaactaacatcttcagacgaatggtacacataccttgaac |
128 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21550076 |
actttacacatgccatgtttaataatctagactattaaacaggcttaaggaatttacgattaactaacatcttcagacaaatggtacacataccttgaac |
21549977 |
T |
|
| Q |
129 |
ttttcaagccttgttgtttccaagccgaacgactccgcatacttttagctctaaagtctcgaaatactcctttttcgtgcacacatgataagagcagcct |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| | |
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|
| T |
21549976 |
ttttcaagccttgttgtttccaagccgaacgactccgcatacttttagctctaaagtctcaaaatactcctttttcgggcacacatgataagagcagctt |
21549877 |
T |
|
| Q |
229 |
gattccaagacgcaacnnnnnnnnggtttccaacttgtgagtgctagtgcacccccactctcaaaaccatcttcatctaggaaactacaacttgaacgaa |
328 |
Q |
| |
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||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21549876 |
gat-ccaagacgcaacttttttc-ggtttccaacttgtgagtgctagtgcacccccactctcataaccatcttcatctaggaaactacaacttgaacgaa |
21549779 |
T |
|
| Q |
329 |
ataactaccattttctcctttgttaggacaattcttctagaagggaccgagcatatgacaaatgaaacatcaatatttcgatttatcaaaccctttagac |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21549778 |
ataactaccattttctcctttgttaggacaattcttcttgaagggaccgagcatatgacaaatgaaacatcaatatttcgatttatcaaaccctttagac |
21549679 |
T |
|
| Q |
429 |
cttgacttccctttgccctttcctatatgctcactcctttgccttaaaacattgaagccttcgcca |
494 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
21549678 |
cttgacttccctttgccctttcctatatgctcactcctttgccttaaaacattcaagccttcgcca |
21549613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 421
Target Start/End: Original strand, 24077691 - 24078008
Alignment:
| Q |
105 |
acgaatggtacacataccttgaacttttcaagccttgttgtttccaagccgaacgactccgcatacttttagctctaaagtctcgaaatactcctttttc |
204 |
Q |
| |
|
||||| |||| |||| | ||| ||||| ||||||||||| ||| || ||||| ||||| | | ||||||| || |||||||| ||||| |||||| | |
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| T |
24077691 |
acgaacggtagacatgcgttggactttgcaagccttgttatttttgagtcgaacaactccaccttcttttagatccaaagtctcaaaatattcctttccc |
24077790 |
T |
|
| Q |
205 |
gtgcacacatgataagagcagcctgattccaagacgcaacnnnnnnnnggtttccaacttgtgagtgctagtgcacccccactctcaaaaccatcttcat |
304 |
Q |
| |
|
||| ||||||||||| ||||| |||||||| |||| | || ||||||||||| |||| ||||||| |||||||| |||||||||||| |
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|
| T |
24077791 |
aaaaacatgtgataagagcaccctgagtccaagacccaactcttctctgattcccaacttgtgatcgctaatgcacccgcactctcataaccatcttcat |
24077890 |
T |
|
| Q |
305 |
ct-aggaaactacaacttgaacgaaataactaccattttctcctttgttaggacaattcttctagaagggaccgagcatatgacaaatgaaacatcaata |
403 |
Q |
| |
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| | | | | |||||| ||| || ||||||||||| |||| |||| |||||||| ||||| |||| |||| | |||||||||||||| ||| ||| |
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| T |
24077891 |
cggacgccattgcaacttaaacagaagaactaccatttcctcccttgtcaggacaatccttcttgaagtgaccatgtttatgacaaatgaaatatcgata |
24077990 |
T |
|
| Q |
404 |
tttcgatttatcaaaccc |
421 |
Q |
| |
|
|| |||||||||||||| |
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| T |
24077991 |
ctttgatttatcaaaccc |
24078008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 21198116 - 21198153
Alignment:
| Q |
382 |
tatgacaaatgaaacatcaatatttcgatttatcaaac |
419 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |
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|
| T |
21198116 |
tatgacaaatgaaacatcgatatttcgatttatcaaac |
21198153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 407
Target Start/End: Original strand, 34841525 - 34841679
Alignment:
| Q |
253 |
ggtttccaacttgtgagtgctagtgcacccccactctcaaaaccatcttcatctaggaa---actacaacttgaacgaaataactaccattttctccttt |
349 |
Q |
| |
|
||||||||| |||||| ||||||||||| ||||||| ||||||||||||| |||| ||| |||||||||| || |||||||||| | || || |
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| T |
34841525 |
ggtttccaatttgtgaccgctagtgcacctgcactctcctaaccatcttcatc--ggaagtcactgcaacttgaaccgaagaactaccattgcccccatt |
34841622 |
T |
|
| Q |
350 |
gttaggacaattcttctagaagggaccgagcatatgacaaatgaaacatcaatatttc |
407 |
Q |
| |
|
|||||||||| ||||| |||| || || || |||||||||||||||||| ||||||| |
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| T |
34841623 |
-ttaggacaatgcttcttgaagtgatcgggcttatgacaaatgaaacatcgatatttc |
34841679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 201
Target Start/End: Complemental strand, 10628740 - 10628633
Alignment:
| Q |
94 |
aacatcttcagacgaatggtacacataccttgaacttttcaagccttgttgtttccaagccgaacgactccgcatacttttagctctaaagtctcgaaat |
193 |
Q |
| |
|
||||| || |||||||| |||| ||||||||||| ||| |||||||| || || ||||| | ||| ||||| | | |||| ||||||||||| || || | |
|
|
| T |
10628740 |
aacattttgagacgaatagtactcataccttgaattttacaagccttattattaccaaggcaaacaactccaccttctttcagctctaaagtttcaaagt |
10628641 |
T |
|
| Q |
194 |
actccttt |
201 |
Q |
| |
|
|||||||| |
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| T |
10628640 |
actccttt |
10628633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 239
Target Start/End: Complemental strand, 17706 - 17561
Alignment:
| Q |
94 |
aacatcttcagacgaatggtacacataccttgaacttttcaagccttgttgtttccaagccgaacgactccgcatacttttagctctaaagtctcgaaat |
193 |
Q |
| |
|
||||| || ||||| || |||| ||||||||||| ||| |||||||| || || ||||| ||||| ||||| | | |||| |||||||| || || || | |
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|
| T |
17706 |
aacattttgagacggatagtacccataccttgaattttacaagccttattattcccaaggcgaactactccaccttctttcagctctaacgtttcaaagt |
17607 |
T |
|
| Q |
194 |
actcctttttcgtgcacacatgataagagcagcctgattccaagac |
239 |
Q |
| |
|
|||||||| ||| || | ||||||||||| || || |||||||| |
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|
| T |
17606 |
actcctttctcggacagatgtgataagagcatccagagtccaagac |
17561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 239
Target Start/End: Original strand, 10611601 - 10611722
Alignment:
| Q |
118 |
ataccttgaacttttcaagccttgttgtttccaagccgaacgactccgcatacttttagctctaaagtctcgaaatactcctttttcgtgcacacatgat |
217 |
Q |
| |
|
|||||||||| ||| |||||||| ||||||||||| ||||| ||||| | | ||| |||||||| || || || ||||||||| ||| || | |||| |
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|
| T |
10611601 |
ataccttgaattttacaagccttattgtttccaaggcgaactactccaccttcttccagctctaacgtttcaaagtactcctttctcggacagatgtgat |
10611700 |
T |
|
| Q |
218 |
aagagcagcctgattccaagac |
239 |
Q |
| |
|
||||||| || || |||||||| |
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|
| T |
10611701 |
aagagcacccagagtccaagac |
10611722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 466
Target Start/End: Complemental strand, 9602839 - 9602799
Alignment:
| Q |
426 |
gaccttgacttccctttgccctttcctatatgctcactcct |
466 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||||||||||| |
|
|
| T |
9602839 |
gaccttgatttccctttgccttttcctctatgctcactcct |
9602799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 304
Target Start/End: Original strand, 16263290 - 16263322
Alignment:
| Q |
272 |
ctagtgcacccccactctcaaaaccatcttcat |
304 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
16263290 |
ctagtgcacccgcactctcaaaaccatcttcat |
16263322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 494
Target Start/End: Complemental strand, 30475 - 30407
Alignment:
| Q |
426 |
gaccttgacttccctttgccctttcctatatgctcactcctttgccttaaaacattgaagccttcgcca |
494 |
Q |
| |
|
||||| |||||||||||||| |||||| |||| |||||| || |||| ||||||| |||| ||||||| |
|
|
| T |
30475 |
gacctcgacttccctttgccttttcctctatggtcactcattctccttgaaacattcaagctttcgcca |
30407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 494
Target Start/End: Original strand, 42369 - 42437
Alignment:
| Q |
426 |
gaccttgacttccctttgccctttcctatatgctcactcctttgccttaaaacattgaagccttcgcca |
494 |
Q |
| |
|
||||| |||||||||||||| |||||| |||| |||||| || |||| ||||||| |||| ||||||| |
|
|
| T |
42369 |
gacctcgacttccctttgccttttcctctatggtcactcattctccttgaaacattcaagctttcgcca |
42437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 1416 - 1468
Alignment:
| Q |
253 |
ggtttccaacttgtgagtgctagtgcacccccactctcaaaaccatcttcatc |
305 |
Q |
| |
|
|||| ||||||||||| ||||||||||| |||||||| ||||||||||||| |
|
|
| T |
1416 |
ggttcccaacttgtgaccactagtgcacccgcactctcataaccatcttcatc |
1468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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