View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0954_low_9 (Length: 502)
Name: NF0954_low_9
Description: NF0954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0954_low_9 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 91 - 502
Target Start/End: Original strand, 36439032 - 36439443
Alignment:
| Q |
91 |
tttcaagcaaaaaaggagagtacctacccaattcatgcttatccacacgtacatacaaatcttgtccaacttgtgtgtaagtcctagtatcctccaaatc |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36439032 |
tttcaagcaaaaaaggagagtacctacccaattcatgcttatccacacgtacatacaaatcttgtccaacttgtgtgtaagtcctagtatcctccaaatc |
36439131 |
T |
|
| Q |
191 |
accatgccaagtaacacacccactttgcaacatctcattttcacttgtaaatgcaacacaagagcaatcccctaaacacatctctctacactccttcaat |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36439132 |
accatgccaagtaacacacccactttgcaacatctcattttcacttgtaaatgcaacacaagagcaatcccctaaacacatctctctacactccttcaat |
36439231 |
T |
|
| Q |
291 |
cccaaactctcgttcacacgtgtcattgaagtatttggcaccttcacacgtaccactgtcacaaacccttccccattgcgacacggggacacattcgact |
390 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
36439232 |
cccaaactctcattcacacgtgtcattgaagtattcggcaccttcacacgtgccactttcacaaacccttccccatttcgacacgtggacacattcgact |
36439331 |
T |
|
| Q |
391 |
tccgcacacacccgcccgacccatctctcaaataccattccctctcaaactttggttcaaatccaggtaaacactcacacccaaatttttccgcattata |
490 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36439332 |
tcctcacacacccacccgacccatctctcaaataccattccctctcaaactttggttcaaatccaggtaaacactcacactcaaatttttccgcattata |
36439431 |
T |
|
| Q |
491 |
cgggtcacaatt |
502 |
Q |
| |
|
|||||||||||| |
|
|
| T |
36439432 |
cgggtcacaatt |
36439443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University