View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0955_low_10 (Length: 320)
Name: NF0955_low_10
Description: NF0955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0955_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 7 - 193
Target Start/End: Complemental strand, 38430036 - 38429848
Alignment:
| Q |
7 |
cttcaagctcctatatcaatactatcatgtgtttctcatcctcaagttaatggttctgatggtgcttgggtgagtggtggtgaattttcacaaatttctg |
106 |
Q |
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| T |
38430036 |
cttcaagctcctatatcaatactatcatgtgtttctcatcctcaagttaatggttctgatggtgcttgggtgagtggtggtgaattttcacaaatttctg |
38429937 |
T |
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| Q |
107 |
aaatgaatcatctcatggtaaatgatagcatgagatatgcaattttgatgtag--nnnnnnnngtgtaagtataccaattgttgttagg |
193 |
Q |
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| T |
38429936 |
aaatgaatcatctcatggtaaatgatagcatgagatatgcaattttgatgtagaaaaaaaaatgtgtaagtataccaattgttgttagg |
38429848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 244 - 312
Target Start/End: Complemental strand, 38429797 - 38429729
Alignment:
| Q |
244 |
aggtgattgagtggattattatgtcaatggagatgtgaatattaatgaaatcctccttttgttcatctc |
312 |
Q |
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| T |
38429797 |
aggtgattgagtggattattatgtcaatggagatgtgaatattaatgaaatcctccttttgttcttctc |
38429729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 159
Target Start/End: Complemental strand, 21273039 - 21272964
Alignment:
| Q |
84 |
tggtgaattttcacaaatttctgaaatgaatcatctcatggtaaatgatagcatgagatatgcaattttgatgtag |
159 |
Q |
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| T |
21273039 |
tggtgaatttggccaaatttctgagatcaatcatattatggtaaatgatagtatgagatatgcaattttaatgtag |
21272964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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