View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0955_low_16 (Length: 250)

Name: NF0955_low_16
Description: NF0955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0955_low_16
NF0955_low_16
[»] chr8 (1 HSPs)
chr8 (40-180)||(4215953-4216091)


Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 40 - 180
Target Start/End: Complemental strand, 4216091 - 4215953
Alignment:
Q  40 tttcacacactcgcacaaaataatacatatataaatgtaaagatatcaatggtacacaaactatgcatgcatggccacaatcttcaatcatggaaggatt 139  Q
    ||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4216091 tttcacacactc--acaaaataatacatatataaatgtatagatatcaatggtacacaaactatgcatgcatggccacaatcttcaatcatggaaggatt 4215994  T
Q  140 tgagctgttggcctatcaccaccttcagctgggggattacc 180  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  4215993 tgagctgttggactatcaccaccttcagctgggggattacc 4215953  T

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